NC_048966.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_048966.1 Spatholobus suberectus chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 152173
Tables: 1
This is table 1 of 1 ( 33 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4521--4567 19 2.6 19 93 6 80 38 0 4 57 1.18
4523--4568 11 4.5 11 79 17 55 36 0 4 58 1.18
4563--4588 12 2.2 12 100 0 52 61 7 0 30 1.24
17861--17908 9 5.2 9 82 10 53 62 2 2 33 1.18
24070--24108 12 3.2 12 78 7 51 46 2 2 48 1.29
24546--24604 20 3.4 17 72 19 50 20 1 3 74 1.05
24547--24587 19 2.0 20 90 9 66 19 2 0 78 0.87
24534--24606 34 2.2 33 83 11 87 20 2 2 73 1.08
24534--24605 35 2.1 33 85 10 92 19 2 2 75 1.06
29562--29591 9 3.2 9 90 9 51 53 0 0 46 1.00
29563--29591 10 3.0 10 95 5 51 51 0 0 48 1.00
32483--32522 20 2.0 20 100 0 80 55 15 0 30 1.41
34532--34569 19 2.0 19 94 0 67 39 15 7 36 1.77
47461--47503 21 2.0 21 100 0 86 32 4 0 62 1.15
47563--47592 10 3.0 10 90 0 51 40 6 10 43 1.64
53453--53477 13 1.9 13 100 0 50 64 20 8 8 1.46
53714--53752 18 2.2 18 86 9 53 64 0 5 30 1.15
54967--55006 18 2.2 19 95 4 73 65 5 0 30 1.14
80141--80171 15 2.1 15 100 0 62 32 6 6 54 1.51
88940--89007 21 3.0 22 76 8 66 14 20 7 57 1.61
90223--90285 21 3.0 21 95 0 108 38 4 26 30 1.77
91401--91439 9 4.3 9 93 0 69 35 10 28 25 1.89
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
94224--94262 2 19.0 2 84 5 51 48 0 5 46 1.24
98210--98245 18 1.9 19 88 5 56 8 11 0 80 0.90
108372--108422 25 2.0 25 96 0 93 58 11 9 19 1.60
109903--109932 15 2.0 15 93 0 51 56 0 0 43 0.99
122417--122482 30 2.2 31 89 7 102 19 4 4 71 1.22
127583--127633 25 2.0 25 96 0 93 19 9 11 58 1.60
137760--137795 18 1.9 19 88 5 56 80 0 11 8 0.90
141743--141781 2 19.0 2 84 5 51 46 5 0 48 1.24
144566--144604 9 4.3 9 93 0 69 25 28 10 35 1.89
145720--145782 21 3.0 21 95 0 108 30 26 4 38 1.77
146998--147044 21 2.2 21 84 0 58 59 6 21 12 1.55
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Tables: 1
The End!