NC_049022.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_049022.1 Smilax china plastid, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 158543
Tables: 1
This is table 1 of 1 ( 113 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3303--3330 14 2.0 14 100 0 56 42 7 14 35 1.73
3322--3364 2 23.0 2 81 13 56 46 0 2 51 1.13
3308--3362 22 2.5 21 80 11 65 45 1 5 47 1.36
5880--5928 2 27.0 2 76 19 54 48 2 0 48 1.12
5959--6018 20 3.0 20 92 7 95 30 15 5 50 1.65
6344--6368 13 1.9 13 100 0 50 40 12 8 40 1.72
6592--6625 17 2.0 17 100 0 68 41 11 0 47 1.40
6583--6608 13 2.0 13 100 0 52 46 15 0 38 1.46
6919--6958 15 2.6 16 96 4 73 47 0 0 52 1.00
8116--8143 14 2.0 14 100 0 56 64 7 0 28 1.20
8118--8158 22 2.0 20 90 9 64 65 2 0 31 1.05
8462--8492 16 1.9 16 100 0 62 35 6 0 58 1.24
8466--8517 19 2.7 19 82 11 70 42 1 0 55 1.10
8486--8514 11 2.6 11 100 0 58 44 0 0 55 0.99
8778--8830 17 3.2 16 75 17 54 37 0 1 60 1.08
8803--8859 12 5.0 12 77 12 57 47 0 0 52 1.00
8783--8857 33 2.3 33 84 9 91 41 0 1 57 1.07
13570--13599 15 2.0 15 93 0 51 50 3 6 40 1.45
14361--14386 12 2.2 12 100 0 52 76 0 0 23 0.78
15414--15438 11 2.3 11 100 0 50 44 8 0 48 1.32
15458--15494 8 5.0 8 84 15 53 40 0 0 59 0.97
15458--15497 14 2.9 14 92 7 64 42 0 0 57 0.98
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
15534--15572 19 2.1 19 95 0 69 48 15 2 33 1.58
16544--16599 9 7.1 9 74 25 56 23 8 0 67 1.18
16545--16575 15 2.1 15 100 0 62 25 12 0 61 1.32
16544--16599 15 3.7 15 73 20 53 23 8 0 67 1.18
16665--16706 21 2.0 21 100 0 84 38 14 4 42 1.66
27776--27830 27 2.0 27 96 0 101 36 10 20 32 1.87
28026--28055 15 2.0 15 100 0 60 33 0 13 53 1.40
28028--28061 15 2.3 15 89 0 50 41 0 14 44 1.45
30003--30028 13 2.0 13 100 0 52 53 15 0 30 1.42
42421--42450 15 2.0 15 100 0 60 40 20 0 40 1.52
46208--46247 20 2.0 20 100 0 80 35 15 10 40 1.80
46250--46282 13 2.5 13 95 0 57 45 6 3 45 1.43
47024--47054 15 2.1 15 100 0 62 48 19 6 25 1.72
47087--47149 7 8.6 7 75 20 58 42 0 3 53 1.16
47087--47141 2 29.0 2 77 17 55 43 0 1 54 1.10
47087--47149 12 4.8 13 79 15 60 42 0 3 53 1.16
48127--48169 14 3.1 14 93 6 70 62 9 0 27 1.25
50598--50642 16 2.7 18 86 10 60 33 2 8 55 1.43
50600--50668 29 2.4 29 85 4 86 33 1 10 55 1.43
50673--50713 2 20.5 2 100 0 82 48 0 0 51 1.00
50636--50681 17 2.6 17 96 3 83 34 0 15 50 1.44
50750--50861 18 6.0 18 75 16 86 53 0 5 40 1.30
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
50763--50794 16 2.0 16 100 0 64 62 0 0 37 0.95
50763--50824 8 7.5 8 77 12 54 58 0 4 37 1.20
50921--50952 15 2.1 15 100 0 64 46 0 12 40 1.42
55507--55532 12 2.2 12 100 0 52 50 0 7 42 1.31
57361--57391 15 2.1 15 100 0 62 32 6 6 54 1.51
57386--57410 12 2.1 12 100 0 50 16 24 0 60 1.36
59969--60002 16 2.1 16 100 0 68 44 0 0 55 0.99
60077--60106 9 3.2 9 90 9 51 33 0 0 66 0.92
60057--60115 24 2.4 24 80 8 66 40 0 0 59 0.97
60068--60117 19 2.7 18 81 9 64 36 0 0 64 0.94
60134--60159 13 2.0 13 100 0 52 53 7 0 38 1.30
60185--60238 28 2.0 27 85 3 72 44 1 3 50 1.30
61710--61741 16 2.0 16 93 0 55 25 15 12 46 1.81
65085--65122 16 2.5 16 87 8 53 44 0 2 52 1.14
65082--65124 17 2.4 18 78 17 54 44 0 2 53 1.13
68037--68076 13 3.1 13 100 0 80 37 0 22 40 1.54
68470--68498 14 2.1 14 100 0 58 51 13 6 27 1.66
69688--69725 15 2.5 15 95 0 67 57 0 2 39 1.12
69712--69768 10 5.6 10 75 10 53 57 0 1 40 1.09
69690--69752 17 3.4 18 70 25 51 57 0 3 39 1.15
69692--69763 37 1.9 38 83 13 96 56 0 2 40 1.13
69662--69794 27 4.9 27 71 25 70 57 3 1 36 1.26
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
69707--69764 27 2.2 27 85 14 77 56 0 1 41 1.09
69885--69928 21 2.1 21 86 0 61 31 22 9 36 1.86
72575--72621 24 1.9 25 86 4 69 31 10 2 55 1.46
79790--79815 13 2.0 13 100 0 52 30 15 0 53 1.42
81245--81290 24 1.9 24 95 0 83 26 32 13 28 1.93
85577--85670 9 11.0 9 69 25 62 52 0 1 46 1.07
85577--85657 11 7.9 11 75 17 77 51 0 1 46 1.08
85563--85645 40 2.1 40 100 0 166 46 0 2 50 1.14
85574--85670 21 4.6 22 71 23 84 52 0 1 46 1.07
90890--90972 21 3.8 21 88 4 112 14 26 10 48 1.77
90911--90979 21 3.3 21 91 0 111 13 30 8 47 1.72
93317--93373 24 2.4 24 100 0 114 33 8 24 33 1.86
96429--96477 16 3.1 16 96 0 89 59 6 10 24 1.53
101120--101167 19 2.4 21 82 6 64 14 4 2 79 0.98
101135--101185 27 2.0 27 85 14 72 7 5 5 80 1.02
112680--112728 15 3.1 15 81 16 62 34 0 24 40 1.55
112690--112726 18 2.1 18 100 0 74 32 0 29 37 1.58
114962--114987 12 2.2 12 100 0 52 15 7 0 76 0.99
115128--115160 17 1.9 17 93 0 57 48 6 3 42 1.43
115295--115354 29 2.1 29 100 0 120 35 16 0 48 1.47
115352--115405 2 29.5 2 77 17 55 42 0 0 57 0.98
115352--115466 11 11.1 11 78 15 97 38 0 0 60 1.03
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
115352--115405 9 5.9 10 79 14 55 42 0 0 57 0.98
115352--115382 13 2.4 13 94 0 53 48 0 0 51 1.00
115344--115465 21 5.7 21 73 18 83 39 1 0 59 1.08
115362--115460 14 7.3 14 78 18 86 37 1 0 61 1.03
115371--115476 21 5.1 20 78 10 70 35 1 0 61 1.13
115823--115966 2 80.5 2 67 25 83 43 0 2 54 1.12
115826--115912 19 4.9 18 77 18 94 43 0 0 56 0.99
116445--116504 28 2.1 28 100 0 120 33 13 3 50 1.58
116802--116832 15 2.0 16 93 6 55 83 0 3 12 0.75
120597--120629 14 2.4 14 95 5 59 45 6 0 48 1.27
120690--120726 13 2.8 13 91 0 65 70 0 0 29 0.88
120740--120818 5 16.2 5 71 23 53 40 1 0 58 1.06
120761--120818 23 2.4 24 80 13 66 44 0 0 55 0.99
122287--122318 2 16.0 2 100 0 64 50 0 0 50 1.00
122956--122982 14 1.9 14 100 0 54 40 0 14 44 1.46
142814--142864 27 2.0 27 85 14 72 80 5 5 7 1.02
142833--142885 18 2.7 19 82 11 63 75 1 5 16 1.08
147522--147570 16 3.1 16 96 0 89 24 10 6 59 1.53
150626--150682 24 2.4 24 100 0 114 33 24 8 33 1.86
153020--153088 21 3.3 21 91 0 111 47 8 30 13 1.72
153027--153109 21 3.8 21 88 4 112 48 10 26 14 1.77
158336--158425 14 6.4 14 70 15 62 45 1 0 53 1.07
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
158333--158425 21 4.4 24 70 27 93 46 1 0 52 1.07
158333--158422 11 8.5 11 73 21 77 46 1 0 52 1.07
158354--158436 40 2.1 40 100 0 166 50 2 0 46 1.14
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Tables: 1
The End!