NC_049043.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_049043.1 Dalbergia sissoo isolate A voucher SCQM-18 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 155863
Tables: 1
This is table 1 of 1 ( 47 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1916--1969 19 2.8 19 91 5 83 40 5 0 53 1.24
1949--1981 16 2.0 17 88 5 50 36 12 3 48 1.56
1988--2027 16 2.5 16 87 0 62 30 0 0 70 0.88
3981--4017 14 2.5 16 87 12 53 40 2 0 56 1.13
3984--4019 13 2.8 13 95 4 65 38 5 0 55 1.23
5030--5070 20 2.0 20 95 0 73 17 9 4 68 1.35
6714--6747 13 2.6 13 95 0 59 47 17 0 35 1.48
14351--14377 14 1.9 14 100 0 54 66 18 0 14 1.25
14826--14860 19 1.9 17 88 11 52 57 0 5 37 1.23
25278--25303 13 2.0 13 100 0 52 53 23 0 23 1.46
30240--30286 21 2.2 21 100 0 94 44 10 8 36 1.70
32443--32484 21 2.0 21 95 0 75 26 16 0 57 1.40
34214--34251 18 2.1 18 90 0 58 44 10 7 36 1.68
52316--52355 19 2.1 19 100 0 80 40 5 5 50 1.46
52531--52561 13 2.5 12 90 10 53 29 16 0 54 1.42
52593--52650 19 2.9 21 85 10 68 44 10 0 44 1.38
52694--52765 27 2.9 27 76 16 82 52 1 5 40 1.33
65665--65701 16 2.3 15 90 9 56 24 5 5 64 1.36
67105--67175 27 2.6 28 72 14 67 56 1 8 33 1.38
67196--67231 18 2.0 18 88 0 54 47 2 8 41 1.48
67204--67250 19 2.6 18 89 3 67 42 6 2 48 1.40
68526--68574 20 2.4 21 86 3 64 53 0 6 40 1.26
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
70297--70336 20 2.0 20 100 0 80 40 0 0 60 0.97
80675--80729 19 3.1 19 92 7 89 45 10 0 43 1.39
80677--80735 19 3.4 18 86 11 79 45 8 0 45 1.33
82014--82068 21 2.6 21 85 2 74 54 1 1 41 1.21
90561--90630 21 3.3 21 83 0 86 11 24 7 57 1.59
92982--93018 18 2.1 18 100 0 74 32 5 27 35 1.79
101153--101188 18 2.0 18 100 0 72 33 5 22 38 1.77
110575--110604 14 2.1 14 93 0 51 43 3 6 46 1.46
110622--110657 18 2.0 18 100 0 72 44 5 11 38 1.63
113763--113795 16 2.1 16 94 0 57 24 21 0 54 1.45
114941--114975 18 1.9 18 88 0 52 62 0 2 34 1.10
115025--115085 2 33.0 2 75 15 51 47 1 0 50 1.10
115019--115057 19 2.2 19 86 9 55 38 0 0 61 0.96
115016--115060 22 2.0 23 91 4 74 37 0 0 62 0.96
115016--115079 21 3.0 21 86 6 76 40 1 0 57 1.08
115018--115087 25 2.8 25 79 8 72 44 1 0 54 1.09
120316--120367 20 2.7 20 87 3 70 50 0 1 48 1.12
121035--121066 16 2.0 16 100 0 64 56 12 6 25 1.59
126782--126831 24 2.1 24 81 7 57 28 2 12 58 1.45
130708--130743 18 2.0 18 100 0 72 38 11 5 44 1.63
130761--130790 14 2.1 14 93 0 51 46 6 3 43 1.46
140177--140212 18 2.0 18 100 0 72 38 22 5 33 1.77
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
148347--148383 18 2.1 18 100 0 74 35 27 5 32 1.79
150753--150804 21 2.5 21 90 0 86 59 9 21 9 1.57
150768--150824 24 2.5 22 83 8 62 56 12 17 14 1.68
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Tables: 1
The End!