NC_049080.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_049080.1 Pterocarpus marsupium isolate NangZZT chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 158451
Tables: 1
This is table 1 of 1 ( 66 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4877--4914 18 2.1 18 95 0 67 42 13 10 34 1.78
4921--4969 26 1.9 25 84 12 64 67 4 4 24 1.26
4985--5018 17 1.9 18 94 5 61 76 0 5 17 0.98
10394--10434 20 2.0 20 100 0 82 39 14 9 36 1.79
10478--10517 15 2.6 16 84 15 57 35 12 5 47 1.63
11936--11965 12 2.5 12 94 0 51 73 6 0 20 1.05
15322--15365 13 3.5 13 90 6 63 52 4 0 43 1.22
15324--15380 13 4.5 13 86 4 62 52 1 0 45 1.11
15312--15368 29 1.9 30 82 10 73 50 3 0 45 1.18
15315--15373 25 2.3 26 77 5 68 49 3 0 47 1.18
18473--18506 17 2.0 17 94 0 59 55 8 5 29 1.54
19125--19230 24 4.6 23 72 18 78 17 4 4 72 1.20
19139--19239 18 5.7 18 77 13 95 20 5 4 68 1.30
19195--19249 24 2.2 24 83 6 65 25 3 5 65 1.31
19242--19270 15 1.9 15 100 0 58 37 0 0 62 0.96
25356--25397 19 2.1 20 91 8 68 33 4 2 59 1.31
25356--25392 19 1.9 19 100 0 74 35 5 0 59 1.20
25620--25645 13 2.0 13 100 0 52 53 23 0 23 1.46
31436--31467 14 2.3 14 100 0 64 43 12 0 43 1.42
31462--31515 2 28.0 2 77 7 58 55 0 0 44 0.99
31462--31515 8 6.8 8 83 8 74 55 0 0 44 0.99
31586--31610 13 1.9 13 100 0 50 60 0 16 24 1.36
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
32696--32737 18 2.3 18 87 0 57 30 11 2 54 1.49
34383--34409 10 2.7 10 100 0 54 18 7 0 74 1.05
43938--43981 15 2.9 15 96 0 79 43 0 18 38 1.50
56158--56199 20 2.1 20 95 0 75 45 21 2 30 1.65
56821--56860 20 2.0 20 95 0 71 47 5 7 40 1.54
57705--57749 21 2.1 21 100 0 90 48 0 8 42 1.34
61597--61636 13 3.1 13 85 7 55 45 2 0 52 1.14
63073--63124 26 2.0 26 100 0 104 19 15 7 57 1.62
65906--65938 16 2.1 16 100 0 66 45 0 18 36 1.49
68116--68173 24 2.4 23 75 16 55 31 3 1 63 1.21
68165--68196 16 2.1 15 94 5 55 25 6 3 65 1.31
69217--69261 12 3.8 12 85 11 58 46 6 2 44 1.42
70936--70960 12 2.1 12 100 0 50 32 8 0 60 1.26
82954--83037 24 3.7 24 76 20 74 50 2 4 42 1.36
84319--84369 3 16.3 3 77 22 52 33 0 0 66 0.92
84312--84369 17 3.3 18 90 9 93 34 0 0 65 0.93
84432--84471 19 2.2 18 86 4 53 47 2 0 50 1.14
84436--84474 15 2.6 15 84 8 53 48 5 0 46 1.24
93358--93425 21 3.2 21 82 0 82 11 22 7 58 1.57
95771--95825 18 3.1 18 100 0 110 32 5 27 34 1.80
95771--95825 9 6.1 9 76 0 56 32 5 27 34 1.80
102907--102944 19 2.0 19 100 0 76 31 10 15 42 1.81
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
102910--102956 19 2.5 19 85 0 58 31 12 17 38 1.87
103126--103164 1 39.0 1 84 0 51 7 0 0 92 0.39
103126--103164 12 3.2 12 100 0 78 7 0 0 92 0.39
116518--116553 19 1.9 18 88 5 54 63 2 5 27 1.30
116518--116569 26 2.0 26 96 0 95 63 3 7 25 1.38
116907--116933 12 2.2 12 100 0 54 85 0 7 7 0.75
117746--117793 2 26.0 2 84 16 68 47 0 0 52 1.00
117744--117796 23 2.5 23 85 14 78 49 0 0 50 1.00
119252--119277 12 2.2 12 100 0 52 50 7 15 26 1.71
119272--119319 22 2.2 22 96 3 89 54 0 8 37 1.31
119313--119349 19 1.9 19 88 0 56 45 2 5 45 1.40
122928--123001 5 15.6 5 76 16 68 81 1 1 16 0.84
122928--123003 13 6.2 13 75 17 81 81 1 1 15 0.82
122928--123005 31 2.6 30 82 10 95 79 1 1 17 0.87
125097--125129 16 2.1 16 94 0 57 51 18 3 27 1.60
143587--143625 12 3.2 12 100 0 78 92 0 0 7 0.39
143587--143625 1 39.0 1 84 0 51 92 0 0 7 0.39
143807--143844 19 2.0 19 100 0 76 42 15 10 31 1.81
150926--150980 18 3.1 18 100 0 110 34 27 5 32 1.80
150926--150980 9 6.1 9 76 0 56 34 27 5 32 1.80
153327--153395 21 3.3 21 83 2 86 57 7 23 11 1.58
153359--153415 24 2.5 22 83 8 62 56 12 17 14 1.68
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Tables: 1
The End!