NC_049111.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_049111.1 Mesua ferrea voucher 14CS8150 plastid, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 161494
Tables: 1
This is table 1 of 1 ( 75 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1913--1962 17 2.9 17 93 0 82 36 14 6 44 1.69
2278--2306 15 1.9 15 100 0 58 27 3 20 48 1.66
5337--5376 20 2.0 20 100 0 80 55 5 20 20 1.62
8512--8544 16 2.1 16 94 0 57 24 18 3 54 1.57
8529--8573 22 2.0 22 100 0 90 35 13 0 51 1.41
9058--9119 30 2.1 29 82 11 72 29 6 8 56 1.53
10685--10731 23 2.0 23 95 0 85 48 17 6 27 1.71
10853--10888 18 2.0 18 100 0 72 44 16 0 38 1.48
10912--10940 15 1.9 15 100 0 58 37 0 13 48 1.43
11527--11552 11 2.4 11 100 0 52 42 0 7 50 1.31
14611--14653 10 4.0 10 83 16 59 39 0 0 60 0.97
14596--14656 23 2.7 23 92 2 97 34 0 1 63 1.04
14711--14736 11 2.4 11 100 0 52 50 7 23 19 1.73
30595--30632 18 2.1 18 100 0 76 28 15 0 55 1.41
34567--34615 18 2.9 17 88 11 75 40 6 2 51 1.38
35034--35065 10 3.2 10 95 0 55 46 0 3 50 1.17
35116--35152 15 2.5 15 95 4 67 35 0 0 64 0.94
39477--39508 11 2.8 11 95 4 55 34 3 0 62 1.11
39627--39657 11 2.8 11 90 0 53 41 9 0 48 1.36
39823--39854 12 2.7 12 95 0 55 40 0 6 53 1.26
50082--50144 18 3.1 18 73 26 63 41 0 12 46 1.42
50089--50148 25 2.5 24 91 5 95 43 0 15 41 1.46
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
53098--53139 21 2.0 21 100 0 84 28 9 9 52 1.65
53517--53550 16 2.1 16 100 0 68 32 23 5 38 1.79
59627--59660 14 2.4 14 90 0 50 52 23 8 14 1.69
59753--59791 13 3.0 13 100 0 78 23 23 23 30 1.99
60227--60258 15 2.1 16 94 5 57 46 6 18 28 1.73
61842--61923 14 6.4 13 73 14 64 47 0 12 40 1.41
61842--61923 26 3.2 26 91 5 123 47 0 12 40 1.41
61932--61981 4 13.0 4 77 14 52 68 2 4 26 1.18
61942--61981 15 2.6 16 81 18 50 70 2 2 25 1.13
61942--61981 11 3.5 11 82 3 53 70 2 2 25 1.13
63697--63722 13 2.0 13 100 0 52 46 7 15 30 1.74
63850--63947 7 13.0 7 72 19 65 54 0 0 45 1.00
63850--63947 18 5.8 17 72 17 80 54 0 0 45 1.00
63848--63947 35 2.9 34 75 10 98 54 0 0 46 1.00
63845--63946 51 2.0 51 86 7 145 51 0 0 48 1.00
63858--63944 16 5.3 16 76 13 79 54 0 0 45 1.00
66690--66721 16 2.0 16 93 0 55 43 0 28 28 1.55
66855--66891 17 2.2 17 95 0 65 8 21 0 70 1.13
67240--67277 20 1.9 20 94 0 67 39 7 7 44 1.63
69488--69523 18 2.0 18 88 0 54 33 0 5 61 1.19
71036--71073 15 2.8 14 88 11 53 57 0 0 42 0.98
71072--71107 18 2.0 18 100 0 72 61 11 5 22 1.50
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
71349--71381 15 2.2 15 94 0 57 75 0 15 9 1.03
71417--71459 15 3.0 15 83 6 54 41 9 6 41 1.64
71594--71653 25 2.3 25 91 5 93 30 8 8 53 1.60
73352--73387 17 2.1 17 94 5 63 75 2 5 16 1.12
74181--74212 13 2.5 13 100 0 64 34 9 0 56 1.32
76497--76531 16 2.2 16 89 0 52 71 5 8 14 1.29
76509--76552 22 2.0 22 90 0 70 72 2 9 15 1.19
83931--83976 24 1.9 24 86 0 65 23 30 17 28 1.97
84512--84545 17 2.0 17 100 0 68 29 35 5 29 1.81
85279--85320 15 2.9 15 89 6 61 28 11 4 54 1.57
85298--85339 11 3.6 11 81 12 57 38 11 0 50 1.40
85398--85438 22 1.9 21 85 5 55 34 7 4 53 1.50
93915--93997 21 3.7 23 75 18 77 13 22 9 54 1.68
93937--94004 21 3.2 21 82 0 82 11 22 7 58 1.57
96354--96446 18 5.2 18 89 7 127 30 7 27 34 1.85
96354--96446 36 2.6 35 91 3 141 30 7 27 34 1.85
98589--98613 12 2.1 12 100 0 50 56 8 8 28 1.57
104613--104650 18 2.1 18 100 0 76 21 10 5 63 1.46
104980--105029 16 3.1 16 91 0 82 52 2 16 30 1.55
118823--118861 14 2.8 14 96 0 69 76 0 5 17 0.96
119002--119074 33 2.1 37 78 14 84 53 4 1 41 1.28
119293--119321 13 2.2 13 100 0 58 62 10 13 13 1.55
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
120121--120145 9 2.8 9 100 0 50 20 0 0 80 0.72
126610--126637 14 2.0 14 100 0 56 28 0 7 64 1.20
131503--131535 15 2.2 15 100 0 66 21 6 27 45 1.75
131725--131762 18 2.1 18 100 0 76 28 10 26 34 1.90
145250--145299 16 3.1 16 91 0 82 30 16 2 52 1.55
145629--145666 18 2.1 18 100 0 76 63 5 10 21 1.46
151666--151690 12 2.1 12 100 0 50 28 8 8 56 1.57
153833--153925 18 5.2 18 92 2 143 34 27 7 30 1.85
156276--156364 21 4.1 21 81 5 81 56 8 22 12 1.64
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Tables: 1
The End!