NC_049131.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_049131.1 Rhus potaninii chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 159616
Tables: 1
This is table 1 of 1 ( 36 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
2548--2643 18 5.3 18 96 0 174 33 26 10 30 1.90
5008--5061 24 2.2 25 90 3 83 57 7 24 11 1.58
10487--10547 15 4.1 15 100 0 122 47 13 13 26 1.79
13759--13800 20 2.1 20 100 0 84 35 9 19 35 1.84
14748--14778 16 1.9 16 93 0 53 45 12 0 41 1.42
15046--15090 14 3.1 14 84 6 54 62 0 4 33 1.15
25318--25363 22 2.1 21 84 11 58 41 17 6 34 1.75
27014--27038 13 1.9 13 100 0 50 24 8 0 68 1.16
44618--44650 15 2.2 15 100 0 66 36 15 0 48 1.45
49342--49366 13 1.9 13 100 0 50 16 16 28 40 1.89
55228--55252 12 2.1 12 100 0 50 32 8 8 52 1.60
59250--59274 12 2.1 12 100 0 50 52 8 8 32 1.60
59427--59456 15 2.0 15 93 0 51 33 6 3 56 1.42
59472--59527 26 2.2 26 96 3 105 53 3 14 28 1.57
69510--69542 12 2.5 13 85 14 50 54 15 3 27 1.55
72083--72109 13 2.1 13 100 0 54 40 7 7 44 1.60
73800--73824 12 2.1 12 100 0 50 40 16 0 44 1.47
78335--78377 21 2.0 21 90 0 68 37 18 25 18 1.94
81249--81282 15 2.3 15 89 0 50 38 2 26 32 1.71
83479--83530 27 1.9 27 88 0 77 61 1 5 30 1.30
88139--88164 13 2.0 13 100 0 52 15 15 30 38 1.88
90284--90323 20 2.0 20 100 0 80 30 25 20 25 1.99
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
102246--102299 24 2.2 25 90 3 83 11 24 7 57 1.58
104664--104759 18 5.3 18 96 0 174 30 10 26 33 1.90
113023--113060 18 2.1 18 95 0 67 23 7 5 63 1.42
117597--117668 38 1.9 37 94 2 126 31 22 25 20 1.98
121195--121255 31 2.0 31 96 0 113 39 22 9 27 1.86
126566--126594 14 2.1 14 100 0 58 31 27 13 27 1.94
129845--129888 22 2.0 22 100 0 88 18 13 4 63 1.46
135766--135795 15 2.0 15 100 0 60 40 6 0 53 1.27
142911--142935 12 2.1 12 100 0 50 40 32 0 28 1.57
144093--144128 18 2.0 18 88 0 54 19 11 13 55 1.68
145668--145728 31 2.0 31 96 0 113 27 9 22 39 1.86
149255--149326 38 1.9 37 94 2 126 20 25 22 31 1.98
153863--153900 18 2.1 18 95 0 67 63 5 7 23 1.42
154391--154453 19 3.3 19 72 2 63 79 0 12 7 0.93
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Tables: 1
The End!