NC_049133.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_049133.1 Prosopis cineraria chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 163677
Tables: 1 2
This is table 1 of 2 ( 127 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
2386--2412 14 1.9 14 100 0 54 37 18 7 37 1.79
4990--5014 13 1.9 13 100 0 50 72 12 0 16 1.13
5243--5293 17 3.0 17 100 0 102 23 5 11 58 1.55
5356--5422 12 5.3 12 77 20 66 37 0 2 59 1.13
5354--5419 15 4.6 14 78 21 66 37 0 3 59 1.13
5354--5422 22 3.1 23 78 15 67 37 0 2 59 1.12
5354--5421 27 2.5 28 90 7 104 38 0 2 58 1.13
5354--5431 27 2.9 27 83 12 97 38 1 2 57 1.20
5384--5439 27 2.1 27 82 0 67 41 1 5 51 1.35
5798--5852 23 2.5 22 80 11 67 61 3 1 32 1.24
5818--5852 15 2.3 15 90 0 61 60 2 0 37 1.12
6044--6089 15 3.1 15 96 0 83 67 0 10 21 1.21
6302--6331 15 2.0 15 100 0 60 53 0 20 26 1.46
8773--8830 22 2.7 23 84 10 77 24 8 1 65 1.30
8742--8827 10 8.3 10 71 15 68 24 8 2 65 1.32
10086--10115 14 2.1 14 100 0 60 30 13 0 56 1.37
10486--10514 11 2.5 12 88 11 51 34 6 0 58 1.25
10653--10698 12 4.2 11 78 18 51 43 0 8 47 1.34
10689--10719 15 2.1 15 100 0 62 35 0 0 64 0.94
12745--12800 9 6.7 9 74 15 57 53 10 0 35 1.36
12744--12792 16 3.1 16 88 5 73 48 12 0 38 1.41
12746--12825 25 3.1 26 76 18 69 57 6 0 36 1.24
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
12778--12822 21 2.1 21 88 8 65 62 2 0 35 1.08
12787--12827 17 2.4 17 88 8 57 60 0 0 39 0.96
17473--17515 14 2.9 15 89 6 70 44 13 0 41 1.44
17512--17578 22 3.1 21 73 23 59 44 1 0 53 1.09
17552--17623 29 2.4 30 82 11 94 37 0 0 62 0.95
17566--17629 14 4.5 14 80 14 69 34 0 0 65 0.93
26228--26275 24 2.0 23 88 4 69 62 6 4 27 1.38
31067--31112 24 1.9 24 100 0 92 26 13 0 60 1.32
31151--31184 17 2.0 17 94 0 59 23 20 5 50 1.70
32208--32254 23 2.1 22 84 11 60 51 6 0 42 1.27
32256--32301 23 2.0 23 100 0 92 56 4 0 39 1.19
32259--32308 23 2.2 23 92 0 82 62 4 0 34 1.14
32292--32323 15 2.1 16 94 5 57 65 0 0 34 0.93
33610--33642 16 2.1 17 88 11 52 15 0 12 72 1.12
36688--36721 17 2.0 17 100 0 68 52 5 5 35 1.50
36714--36744 16 1.9 16 93 0 53 48 6 12 32 1.67
37030--37086 19 3.1 19 92 2 89 35 8 15 40 1.79
37035--37089 18 3.0 18 91 2 83 34 7 16 41 1.76
37177--37220 22 2.0 22 95 0 79 52 13 15 18 1.75
37540--37582 18 2.7 16 80 19 54 39 0 9 51 1.34
37553--37590 18 2.1 18 90 0 58 42 0 10 47 1.38
37981--38019 20 2.0 20 100 0 78 33 15 15 35 1.89
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
41984--42008 13 1.9 13 100 0 50 40 0 12 48 1.40
41997--42046 24 2.1 24 96 0 91 44 6 4 46 1.47
42546--42598 17 3.1 17 100 0 106 28 5 5 60 1.42
48440--48513 20 4.0 19 87 12 118 66 5 5 22 1.34
48444--48513 19 3.9 17 83 16 88 65 5 5 22 1.36
48444--48514 35 2.0 36 97 2 135 64 5 5 23 1.37
48438--48515 19 4.2 19 79 20 85 65 5 5 24 1.34
48443--48541 36 2.9 34 85 11 121 65 4 5 25 1.30
48538--48611 3 24.7 3 78 10 80 64 6 0 28 1.18
48538--48611 13 6.2 13 80 13 88 64 6 0 28 1.18
51963--51990 14 2.0 14 100 0 56 50 0 7 42 1.30
52324--52354 15 2.1 15 100 0 62 19 12 6 61 1.53
52599--52629 14 2.2 14 100 0 62 32 12 0 54 1.38
52623--52657 17 2.1 17 100 0 70 34 5 17 42 1.73
52732--52761 15 2.0 15 93 0 51 36 0 13 50 1.42
52744--52788 19 2.4 18 82 17 56 42 0 4 53 1.21
52774--52832 22 2.8 21 89 5 91 40 3 1 54 1.27
53111--53136 13 2.0 13 100 0 52 30 23 7 38 1.83
53864--53904 20 2.0 20 95 0 73 26 7 21 43 1.79
57419--57462 17 2.4 18 85 11 54 25 4 0 70 1.06
57430--57469 19 2.1 19 90 9 64 30 5 0 65 1.14
57438--57476 19 2.0 20 85 5 53 35 5 0 58 1.20
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
57770--57816 17 2.9 17 93 6 80 42 6 6 44 1.55
57898--57938 20 2.1 19 90 4 64 48 19 2 29 1.61
57986--58023 13 2.9 13 92 7 60 36 0 0 63 0.95
58020--58075 10 5.6 10 91 0 94 53 0 19 26 1.45
58020--58079 20 3.0 20 100 0 120 55 0 20 25 1.44
58131--58190 22 2.7 21 85 12 68 66 0 10 23 1.21
61651--61676 12 2.2 12 100 0 52 15 23 0 61 1.33
63623--63670 23 2.0 24 96 4 89 41 10 12 35 1.77
63692--63734 14 2.8 16 89 10 72 25 0 9 65 1.22
63763--63859 27 3.4 29 73 19 98 29 5 1 63 1.22
63808--63864 11 5.4 11 87 6 82 26 5 0 68 1.11
63893--63922 16 1.9 15 93 6 51 33 13 6 46 1.69
66203--66245 20 2.2 20 100 0 86 51 4 4 39 1.44
66332--66374 15 2.9 15 83 13 61 41 2 0 55 1.12
66325--66400 27 2.6 30 82 12 88 46 1 1 51 1.17
66515--66550 17 2.1 17 94 0 63 33 11 5 50 1.61
70519--70549 15 2.1 15 100 0 62 51 12 9 25 1.70
70822--70851 11 2.9 10 90 9 51 40 10 0 50 1.36
70856--70909 16 3.2 16 82 10 63 24 3 0 72 1.01
75142--75171 15 2.0 15 100 0 60 40 13 0 46 1.43
75636--75667 16 2.0 16 100 0 64 50 6 0 43 1.27
75646--75691 23 2.0 23 91 0 74 41 6 2 50 1.40
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
75705--75752 16 3.0 16 81 6 62 39 0 0 60 0.97
75873--75911 21 1.9 21 89 5 62 30 23 10 35 1.88
77791--77839 24 2.0 25 92 8 82 48 0 8 42 1.32
78474--78514 13 3.2 13 96 0 73 34 0 12 53 1.38
79277--79316 16 2.4 16 88 12 55 42 2 0 55 1.13
87628--87657 13 2.4 13 94 5 53 3 0 13 83 0.77
88757--88821 6 10.8 6 75 18 64 47 3 0 49 1.17
88817--88869 25 2.0 28 82 13 69 24 5 7 62 1.44
91085--91151 22 3.0 22 100 0 134 50 8 17 22 1.74
92089--92124 18 2.0 18 94 0 63 16 30 0 52 1.44
92094--92131 18 2.2 18 90 4 60 23 23 0 52 1.47
92141--92172 16 2.0 16 93 0 55 65 12 0 21 1.25
92621--92687 15 4.2 15 85 14 98 61 0 7 31 1.24
92588--92691 15 5.8 19 79 13 89 59 0 8 31 1.28
92647--92702 19 2.9 19 89 7 69 62 0 10 26 1.28
97824--97891 21 3.2 21 82 0 82 11 22 7 58 1.57
100235--100273 9 4.3 9 83 0 51 33 5 23 38 1.77
100235--100273 18 2.2 18 95 0 69 33 5 23 38 1.77
108445--108477 11 3.1 11 91 4 50 33 0 15 51 1.43
118909--118946 19 2.0 19 100 0 76 57 0 0 42 0.98
118899--118981 30 3.1 26 84 10 96 62 0 0 37 0.95
118884--118945 11 6.0 11 85 14 80 53 1 0 45 1.10
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
118920--118983 25 2.7 23 79 15 67 64 0 0 35 0.94
118911--118983 22 3.3 22 81 11 78 63 0 0 36 0.95
124087--124139 19 2.8 19 88 2 72 41 7 0 50 1.30
124136--124191 26 2.2 25 90 3 85 69 1 3 25 1.14
124142--124181 21 2.0 21 90 5 64 72 2 5 20 1.15
129994--130078 2 48.0 2 66 27 50 50 2 0 47 1.14
130000--130094 14 7.1 14 72 20 78 52 1 0 46 1.07
130003--130063 11 5.8 11 80 16 67 50 1 0 47 1.10
130003--130093 30 3.0 31 80 16 102 53 1 0 45 1.07
130003--130086 19 4.5 19 85 11 104 53 1 0 45 1.08
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Tables: 1 2