NC_049631.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_049631.1 Descurainia sophia chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 154003
Tables: 1
This is table 1 of 1 ( 27 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4676--4711 17 2.1 17 89 0 54 30 8 5 55 1.52
8086--8123 14 2.7 15 84 8 53 52 2 0 44 1.14
15771--15815 22 2.0 22 100 0 90 46 13 8 31 1.74
22294--22331 19 2.0 19 100 0 76 78 0 0 21 0.74
26834--26868 17 2.0 18 88 5 54 25 2 0 71 1.00
29768--29801 17 2.0 17 88 0 50 76 5 8 8 1.15
31535--31564 15 2.0 15 100 0 60 33 13 0 53 1.40
32656--32685 15 2.0 15 100 0 60 53 6 6 33 1.53
36260--36308 22 2.2 22 82 7 55 51 2 2 44 1.24
36269--36322 22 2.5 22 84 6 65 50 0 1 48 1.11
36312--36345 17 2.0 17 88 0 50 35 0 14 50 1.44
42934--42960 14 1.9 14 100 0 54 51 0 0 48 1.00
47904--48272 76 4.6 76 86 8 468 32 18 22 26 1.97
48171--48334 83 2.0 83 90 0 256 32 17 26 24 1.96
63283--63331 17 2.8 17 79 17 55 36 8 6 48 1.58
63323--63360 2 18.5 2 89 5 58 52 0 2 44 1.14
84610--84648 20 2.0 20 89 0 60 33 10 12 43 1.77
88795--88873 24 3.4 24 93 5 128 15 21 11 51 1.74
88810--88901 21 4.2 21 87 4 112 13 21 8 56 1.63
91248--91305 18 3.4 17 88 6 75 32 6 22 37 1.81
107466--107526 32 1.9 32 96 0 113 40 24 9 24 1.85
130376--130436 32 1.9 32 96 0 113 24 9 24 40 1.85
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
146597--146642 18 2.6 18 92 0 74 34 23 8 32 1.86
146597--146654 18 3.4 17 88 6 66 37 22 6 32 1.81
149002--149094 21 4.3 21 85 8 116 55 8 22 12 1.64
149029--149107 24 3.4 24 93 5 128 51 11 21 15 1.74
153254--153292 20 2.0 20 89 0 60 43 12 10 33 1.77
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Tables: 1
The End!