NC_049869.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_049869.1 Ophiopogon japonicus chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 156564
Tables: 1
This is table 1 of 1 ( 39 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
7282--7306 12 2.1 12 100 0 50 44 8 8 40 1.63
9391--9420 15 2.0 15 100 0 60 40 6 20 33 1.78
23038--23063 12 2.2 12 100 0 52 46 11 15 26 1.80
36122--36151 14 2.1 14 100 0 60 20 6 23 50 1.71
36475--36513 14 2.7 14 92 4 60 33 0 15 51 1.44
43338--43389 26 2.0 26 100 0 104 30 19 19 30 1.96
45147--45176 15 2.0 15 93 0 51 43 0 36 20 1.52
46722--46756 17 2.1 17 94 0 61 42 8 5 42 1.59
46805--46874 23 2.9 24 79 14 81 48 4 1 45 1.30
46804--46874 25 2.8 26 81 14 87 49 4 1 45 1.30
46801--46869 9 6.9 10 70 18 54 49 2 1 46 1.25
47028--47108 16 5.5 15 80 14 69 46 4 0 48 1.23
47030--47124 29 3.2 30 80 5 86 47 5 0 47 1.24
47045--47142 31 3.2 30 80 10 92 47 6 0 45 1.27
51087--51138 27 1.9 27 88 7 79 55 9 3 30 1.50
51233--51267 13 2.8 13 95 4 63 37 0 0 62 0.95
57572--57598 14 1.9 14 100 0 54 62 7 14 14 1.51
61729--61761 12 2.6 13 90 9 59 30 9 0 60 1.27
67213--67254 19 2.3 19 87 4 59 21 14 19 45 1.85
69172--69212 21 2.0 21 90 4 66 68 4 2 24 1.22
69275--69318 21 2.1 21 86 0 61 34 25 9 31 1.87
70356--70390 17 2.1 17 100 0 70 28 22 8 40 1.84
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
78360--78388 14 2.1 14 100 0 58 34 6 20 37 1.80
80634--80679 24 1.9 24 90 0 74 26 34 13 26 1.92
83448--83484 19 1.9 19 94 0 65 27 5 2 64 1.28
83488--83514 14 1.9 14 100 0 54 44 0 3 51 1.19
87791--87842 23 2.3 23 96 3 97 46 7 21 25 1.77
90278--90388 21 5.1 21 92 3 159 13 25 9 51 1.72
92738--92804 24 3.6 18 74 25 59 32 7 22 37 1.82
92745--92797 24 2.2 24 96 0 97 33 9 22 33 1.86
119213--119272 17 3.5 17 77 11 68 28 3 1 66 1.17
119227--119282 29 1.9 29 82 7 69 26 1 7 64 1.29
122121--122162 17 2.3 18 80 16 50 47 11 4 35 1.61
127423--127462 15 2.7 15 84 0 53 35 7 2 55 1.42
128958--129044 15 5.8 15 98 0 165 27 12 6 52 1.64
148896--148962 24 3.6 18 74 25 59 37 22 7 32 1.82
148903--148955 24 2.2 24 96 0 97 33 22 9 33 1.86
151312--151402 21 4.3 21 95 0 155 51 8 26 13 1.69
153858--153909 23 2.3 23 96 3 97 25 21 7 46 1.77
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Tables: 1
The End!