NC_050008.1.fas.2.7.7.80.10.50.500.1.html

    Tandem Repeats Finder Program written by:

    Gary Benson
    Program in Bioinformatics
    Boston University
    Version 4.09

    Please cite:
    G. Benson,
    "Tandem repeats finder: a program to analyze DNA sequences"
    Nucleic Acid Research(1999)
    Vol. 27, No. 2, pp. 573-580.

    Sequence: NC_050008.1 Dryopteris crassirhizoma chloroplast, complete genome
    Parameters: 2 7 7 80 10 50 500
    Length:  148950

    Tables:   1   

    This is table  1  of  1  ( 20 repeats found )

    Click on indices to view alignment

Table Explanation

  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
  Indices                            Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T    Entropy
                                     Size     Number   Size        Matches   Indels                                (0-2)

  3121--3158                         19       2.0      19          94        0         67      39   10   13   36   1.79

  8679--8708                         11       2.7      11          100       0         60      60   10   0    30   1.30

  28409--28441                       17       2.1      17          88        11        52      6    33   12   48   1.65

  36185--36218                       17       2.0      17          100       0         68      70   0    11   17   1.16

  62534--62575                       21       2.0      21          100       0         84      38   19   14   28   1.90

  62537--62582                       21       2.1      21          92        4         74      39   17   17   26   1.91

  85699--85750                       9        5.8      9           74        17        54      30   11   11   46   1.76

  85702--85755                       18       3.0      18          100       0         108     27   11   11   50   1.72

  93061--93095                       16       2.2      16          100       0         70      51   17   11   20   1.75

  94589--94621                       16       2.1      16          100       0         66      57   12   12   18   1.64

  99281--99330                       24       2.1      24          84        0         64      46   14   16   24   1.83

  103274--103335                     12       5.2      12          96        0         106     45   0    29   25   1.54

  109029--109068                     2        20.0     2           84        0         53      52   0    0    47   1.00

  112266--112293                     14       2.0      14          100       0         56      64   0    7    28   1.20

  127998--128059                     12       5.2      12          96        0         106     25   29   0    45   1.54

  132003--132052                     24       2.1      24          84        0         64      24   16   14   46   1.83

  136713--136745                     16       2.1      16          100       0         66      18   12   12   57   1.64

  138239--138273                     16       2.2      16          100       0         70      20   11   17   51   1.75

  145579--145632                     18       3.0      18          100       0         108     50   11   11   27   1.72

  145584--145635                     9        5.8      9           74        17        54      46   11   11   30   1.76
  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------

    Tables:   1   

The End!