NC_050163.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_050163.1 Areca catechu chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 158689
Tables: 1
This is table 1 of 1 ( 88 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3883--3919 12 3.1 12 92 0 65 64 0 0 35 0.94
3881--3929 24 2.0 24 88 7 73 61 2 0 36 1.08
8490--8588 16 6.5 15 71 11 67 22 5 0 72 1.03
8492--8583 15 6.6 14 72 16 59 22 5 0 71 1.06
8493--8598 4 26.2 4 68 16 58 23 4 0 71 1.04
8544--8598 25 2.2 24 96 3 83 21 3 0 74 0.97
8672--8713 6 6.1 7 78 15 52 61 0 11 26 1.30
8696--8735 15 2.7 15 96 0 71 65 0 7 27 1.20
8675--8726 21 2.5 21 93 6 88 63 0 9 26 1.25
9099--9146 13 3.8 13 83 10 64 43 6 0 50 1.27
9097--9158 18 3.4 18 83 16 76 45 6 0 48 1.28
10526--10557 16 2.0 16 93 0 55 25 15 6 53 1.65
13140--13173 17 2.0 17 100 0 68 11 5 11 70 1.32
13151--13188 11 3.5 11 79 13 51 13 5 10 71 1.30
13145--13188 22 2.0 23 95 4 81 13 4 11 70 1.31
14275--14332 29 2.0 30 93 3 100 62 1 17 18 1.42
17432--17461 15 2.0 15 100 0 60 26 13 20 40 1.89
28511--28553 17 2.6 17 74 3 52 48 0 16 34 1.46
30385--30437 22 2.4 22 96 0 97 37 0 7 54 1.29
30706--30761 16 3.6 16 86 9 80 44 3 7 44 1.48
32723--32762 20 2.0 20 95 0 71 40 17 7 35 1.78
32922--32959 18 2.1 18 95 0 67 39 18 15 26 1.91
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
33482--33513 15 2.1 15 100 0 64 43 6 12 37 1.68
33843--33883 20 2.0 20 100 0 82 43 9 14 31 1.78
46423--46454 16 2.0 16 100 0 64 31 25 6 37 1.81
47742--47823 41 2.0 41 100 0 164 36 7 9 46 1.65
47844--47915 9 8.1 9 77 20 55 37 1 5 55 1.32
47833--47907 22 3.3 22 73 22 66 37 2 4 56 1.32
47868--47914 3 16.0 3 79 20 55 34 0 4 61 1.15
47852--47946 24 3.7 24 76 19 68 40 3 5 51 1.40
47832--47939 53 2.0 54 85 5 148 39 2 5 51 1.40
47832--47911 25 3.0 27 73 21 78 37 2 5 55 1.35
47905--47952 24 2.0 24 100 0 96 45 4 8 41 1.53
47912--47968 24 2.4 24 87 0 78 49 7 8 35 1.61
48004--48035 15 2.1 15 100 0 64 40 6 12 40 1.68
48103--48143 21 2.0 21 95 0 73 34 4 0 60 1.18
48118--48249 56 2.3 58 92 3 214 40 0 6 52 1.34
48184--48239 22 2.5 22 80 13 62 41 0 8 50 1.34
48155--48245 26 3.3 26 71 16 94 41 0 8 49 1.34
49640--49677 17 2.2 17 100 0 76 28 10 0 60 1.30
59036--59067 16 2.0 16 100 0 64 37 25 0 37 1.56
61695--61733 11 3.0 14 78 21 57 30 20 0 48 1.50
61722--61758 17 2.2 17 90 0 56 43 8 0 48 1.32
61731--61766 17 2.1 17 94 0 63 38 8 2 50 1.47
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
61808--61941 11 12.3 11 78 20 83 52 0 0 47 1.00
61801--61874 6 13.0 6 76 22 54 54 0 0 45 1.00
61822--61941 22 5.3 22 75 14 118 51 0 0 48 1.00
61804--61949 33 4.9 29 73 21 113 52 0 0 47 1.00
61789--61969 22 8.4 22 72 17 71 53 1 0 45 1.07
69935--69992 14 4.5 13 75 14 57 36 6 0 56 1.26
70415--70468 14 3.9 14 82 4 65 46 11 3 38 1.57
70415--70468 28 1.9 28 85 7 74 46 11 3 38 1.57
70433--70503 14 5.1 14 80 13 67 53 9 0 36 1.34
70453--70510 9 6.3 9 79 2 62 56 8 0 34 1.30
70460--70510 18 2.8 18 93 0 84 56 9 0 33 1.32
70549--70583 16 2.2 16 94 0 61 42 0 11 45 1.40
79077--79122 20 2.3 20 96 3 85 32 13 15 39 1.85
82105--82153 24 2.0 24 96 0 89 28 30 12 28 1.93
84502--84527 13 2.0 13 100 0 52 38 0 0 61 0.96
84545--84587 10 4.0 10 77 16 50 48 0 11 39 1.40
84603--84635 16 2.1 16 100 0 66 33 6 6 54 1.50
85091--85139 15 3.5 15 75 16 59 30 2 0 67 1.02
85676--85715 20 2.0 20 100 0 80 40 25 5 30 1.77
86832--86885 9 5.9 9 78 10 56 14 1 1 81 0.86
86849--86889 14 3.0 14 89 3 57 21 0 0 78 0.76
86865--86907 15 2.9 15 86 3 52 37 2 0 60 1.10
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
89883--89913 15 2.1 15 100 0 62 19 32 0 48 1.49
92155--92223 21 3.1 22 89 8 104 13 31 8 46 1.73
94573--94663 15 5.6 17 74 16 86 32 6 24 36 1.81
94580--94656 24 3.2 24 100 0 154 33 7 24 33 1.84
116237--116296 7 8.1 7 73 15 50 56 0 1 41 1.09
120954--120989 16 2.2 17 90 5 56 50 11 2 36 1.53
120939--120982 21 2.1 21 100 0 88 47 9 4 38 1.56
120988--121083 4 26.8 4 75 16 52 46 0 0 53 1.00
121004--121054 20 2.7 20 90 6 79 41 0 0 58 0.98
121001--121113 22 4.9 23 73 15 83 46 0 0 53 1.00
121061--121210 3 50.0 3 71 17 53 62 1 0 36 1.04
120990--121122 23 5.2 28 69 22 71 47 0 0 52 1.00
121063--121096 10 3.4 10 84 15 52 67 0 0 32 0.91
129313--129351 18 2.2 18 100 0 78 56 0 5 38 1.22
130503--130544 19 2.3 18 88 8 59 0 19 2 78 0.86
150845--150919 9 9.0 9 66 16 54 33 25 8 33 1.85
150841--150931 15 5.6 17 74 16 86 36 24 6 32 1.81
150848--150924 24 3.2 24 100 0 154 33 24 7 33 1.84
153281--153349 21 3.1 22 89 6 95 46 8 31 13 1.73
155591--155621 15 2.1 15 100 0 62 48 0 32 19 1.49
158615--158654 14 3.0 14 89 7 57 77 0 0 22 0.77
158619--158672 9 5.9 9 78 10 56 81 1 1 14 0.86
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Tables: 1
The End!