NC_050296.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_050296.1 Rubus chingii chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 155843
Tables: 1
This is table 1 of 1 ( 50 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
345--392 23 2.1 23 88 0 69 37 12 18 31 1.88
1833--1906 32 2.3 32 93 2 123 31 20 13 35 1.91
4833--4859 13 2.1 13 100 0 54 44 0 14 40 1.46
7574--7613 16 2.5 16 100 0 80 45 15 0 40 1.46
8292--8318 14 1.9 14 100 0 54 66 3 0 29 1.09
8684--8714 15 2.1 15 93 0 53 51 9 12 25 1.70
10255--10288 17 2.0 17 100 0 68 52 11 0 35 1.38
10343--10436 47 2.0 47 97 0 179 52 3 8 36 1.48
10346--10448 47 2.2 47 92 3 172 53 2 7 35 1.45
10548--10613 33 2.0 33 100 0 132 54 3 9 33 1.47
13798--13838 20 2.0 20 100 0 82 29 14 19 36 1.92
22228--22257 15 2.0 15 100 0 60 26 13 6 53 1.64
27571--27612 20 2.1 20 100 0 84 30 9 9 50 1.67
28551--28585 16 2.2 17 90 10 56 71 5 11 11 1.30
29472--29501 14 2.1 14 100 0 60 20 23 16 40 1.91
36837--36867 16 1.9 16 100 0 62 38 0 16 45 1.47
47628--47670 14 3.3 13 81 18 54 41 4 13 39 1.66
47643--47671 14 2.1 14 100 0 58 34 6 13 44 1.71
47719--47753 16 2.2 16 89 0 52 37 0 0 62 0.95
47729--47772 23 2.0 20 87 12 61 40 0 2 56 1.11
48164--48200 19 2.0 19 94 5 67 43 5 10 40 1.63
48811--48841 12 2.6 12 94 0 53 32 6 6 54 1.51
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
50000--50026 14 1.9 14 100 0 54 22 14 0 62 1.31
50798--50841 16 2.8 16 100 0 88 20 13 11 54 1.69
56145--56170 13 2.0 13 100 0 52 38 0 15 46 1.46
57671--57720 25 2.0 25 96 0 91 42 12 18 28 1.85
58286--58350 31 2.1 31 100 0 130 30 12 9 47 1.72
60164--60207 24 1.9 24 86 9 65 54 0 0 45 0.99
60201--60245 11 4.0 11 83 16 65 44 0 2 53 1.13
60164--60257 18 5.1 18 73 19 77 48 0 2 48 1.13
60165--60248 16 5.8 16 71 16 58 48 0 1 50 1.08
60206--60256 23 2.3 23 96 3 95 45 0 3 50 1.20
60199--60250 7 7.6 7 76 20 56 44 0 1 53 1.11
63810--63841 16 2.0 16 93 0 55 43 0 9 46 1.35
67524--67557 12 2.9 12 95 4 61 58 0 14 26 1.36
68205--68246 21 1.9 23 85 9 61 35 7 0 57 1.26
68762--68800 21 1.9 21 94 5 71 33 23 10 33 1.88
72467--72507 18 2.3 18 100 0 82 68 0 4 26 1.10
72957--72982 13 2.0 13 100 0 52 23 15 0 61 1.33
75358--75393 18 2.0 18 100 0 72 38 5 11 44 1.63
82829--82863 17 2.1 17 100 0 70 31 17 11 40 1.85
89993--90082 21 4.1 21 81 4 90 12 24 7 55 1.63
92449--92485 18 2.1 18 100 0 74 32 5 27 35 1.79
108406--108467 32 1.9 32 93 0 106 38 22 11 27 1.88
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
113356--113400 21 2.1 21 88 8 65 71 0 2 26 0.98
114218--114246 14 2.1 14 100 0 58 17 13 6 62 1.52
128289--128333 18 2.5 19 82 7 58 4 26 0 68 1.08
132183--132244 32 1.9 32 93 0 106 27 11 22 38 1.88
148165--148201 18 2.1 18 100 0 74 35 27 5 32 1.79
150569--150657 21 4.1 21 81 5 90 55 7 24 12 1.63
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Tables: 1
The End!