NC_050306.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_050306.1 Zanthoxylum nitidum chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 157307
Tables: 1
This is table 1 of 1 ( 32 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3449--3502 27 2.0 27 100 0 108 40 18 11 29 1.85
4786--4845 18 3.6 17 72 22 65 61 0 10 28 1.28
4784--4846 31 2.0 31 100 0 126 61 0 9 28 1.27
8534--8566 15 2.2 15 94 0 57 36 0 3 60 1.12
14304--14345 21 2.0 21 95 0 75 40 11 19 28 1.87
36844--36895 19 2.7 19 96 0 95 51 0 5 42 1.25
43159--43192 16 2.1 16 88 0 50 64 5 5 23 1.38
43505--43541 19 1.9 19 100 0 74 8 16 10 64 1.47
47621--47663 22 2.0 22 95 0 77 25 11 18 44 1.84
51532--51565 17 2.0 17 100 0 68 29 5 5 58 1.45
51699--51735 18 2.1 18 100 0 74 21 10 5 62 1.48
52865--52898 10 3.4 10 91 0 50 35 2 14 47 1.60
57444--57475 16 2.0 16 100 0 64 50 6 25 18 1.70
59697--59745 25 2.0 24 88 4 71 42 10 4 42 1.57
60111--60137 14 1.9 14 100 0 54 22 25 0 51 1.48
68708--68746 21 1.9 21 89 5 62 33 25 10 30 1.89
82463--82515 17 3.1 17 100 0 106 41 11 11 35 1.77
85527--85572 23 2.0 23 95 0 83 47 15 8 28 1.74
89705--89779 21 3.2 24 72 12 75 10 22 9 57 1.61
92147--92200 18 3.0 18 97 0 99 29 9 27 33 1.88
99950--99983 17 2.0 17 94 0 59 5 8 0 85 0.75
100483--100520 18 2.1 18 95 0 67 21 10 7 60 1.54
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
100829--100865 18 2.1 18 100 0 74 48 10 5 35 1.61
108649--108710 32 1.9 32 96 0 115 38 24 9 27 1.86
120934--120970 18 2.1 18 100 0 74 45 5 10 37 1.62
132977--133038 32 1.9 32 96 0 115 27 9 24 38 1.86
140822--140858 18 2.1 18 100 0 74 35 5 10 48 1.61
141167--141204 18 2.1 18 95 0 67 60 7 10 21 1.54
141704--141737 17 2.0 17 94 0 59 85 0 8 5 0.75
149487--149540 18 3.0 18 97 0 99 33 27 9 29 1.88
151908--151982 21 3.2 24 72 12 75 57 9 22 10 1.61
156115--156160 23 2.0 23 95 0 83 28 8 15 47 1.74
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Tables: 1
The End!