NC_050650.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_050650.1 Melia azedarach chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 160393
Tables: 1
This is table 1 of 1 ( 47 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1645--1677 16 2.1 16 100 0 66 48 6 12 33 1.65
4940--4987 24 2.0 24 95 0 87 22 12 14 50 1.77
9750--9779 15 2.0 15 100 0 60 60 13 6 20 1.55
10826--10873 23 2.1 23 100 0 96 39 8 16 35 1.79
11359--11409 14 3.6 14 78 2 57 33 1 3 60 1.26
15576--15620 22 2.0 23 82 4 56 31 15 13 40 1.86
17151--17182 15 2.1 15 100 0 64 31 12 12 43 1.80
30984--31025 22 1.9 22 85 9 59 50 7 4 38 1.51
31873--31899 13 2.1 13 100 0 54 40 0 29 29 1.57
34934--34966 17 1.9 17 93 0 57 45 3 3 48 1.33
38419--38453 17 2.1 17 100 0 70 40 5 25 28 1.78
39189--39229 22 1.9 21 90 5 64 46 0 0 53 1.00
39189--39226 12 3.4 11 82 17 51 47 0 0 52 1.00
39222--39258 16 2.3 16 95 0 65 40 0 5 54 1.24
39250--39284 17 2.1 17 88 0 52 60 2 8 28 1.41
39612--39639 14 2.0 14 100 0 56 57 14 7 21 1.61
50982--51009 14 2.0 14 100 0 56 64 0 21 14 1.29
51831--51857 13 2.1 13 100 0 54 44 14 7 33 1.73
62822--62856 17 2.1 17 100 0 70 48 5 17 28 1.69
66819--66858 20 2.0 20 100 0 80 45 15 5 35 1.68
68992--69031 17 2.2 19 86 8 57 75 5 7 12 1.18
69030--69076 21 2.1 22 84 7 60 59 4 14 21 1.52
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
70605--70638 16 2.1 16 89 10 52 82 0 17 0 0.67
70605--70639 13 2.7 13 90 0 52 82 0 17 0 0.66
71697--71762 22 3.0 22 100 0 132 40 13 0 45 1.44
71827--71865 21 1.9 21 94 5 71 30 25 10 33 1.89
75389--75428 20 2.0 20 100 0 80 40 10 5 45 1.60
76082--76107 13 2.0 13 100 0 52 53 7 7 30 1.57
92902--92963 21 2.7 24 70 14 67 12 22 11 53 1.71
94783--94891 42 2.6 42 98 0 209 33 10 29 26 1.89
95362--95453 18 5.1 18 95 0 166 30 9 26 33 1.88
103679--103707 14 2.1 14 100 0 58 27 0 6 65 1.18
103672--103723 18 3.1 17 78 21 65 25 5 5 63 1.39
108289--108360 38 1.9 37 94 2 126 31 22 23 22 1.98
111888--111953 32 2.1 32 97 0 123 40 24 9 25 1.84
116919--116956 19 2.0 19 100 0 76 57 5 10 26 1.53
117598--117653 28 2.0 28 92 0 94 28 19 12 39 1.88
126434--126467 17 1.9 18 88 5 52 64 2 26 5 1.30
128708--128736 11 2.6 11 100 0 58 62 10 0 27 1.28
132850--132887 18 2.1 18 90 0 58 18 18 13 50 1.78
136039--136104 32 2.1 32 97 0 123 25 9 24 40 1.84
139632--139703 38 1.9 37 94 2 126 22 23 22 31 1.98
144269--144320 18 3.1 17 78 21 65 63 5 5 25 1.39
144285--144313 14 2.1 14 100 0 58 65 6 0 27 1.18
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
152539--152630 18 5.1 18 95 0 166 33 26 9 30 1.88
153101--153209 42 2.6 42 98 0 209 26 29 10 33 1.89
155029--155090 21 2.8 22 73 9 63 53 11 22 12 1.71
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Tables: 1
The End!