NC_050678.1.fas.2.7.7.80.10.50.500.1.html Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: NC_050678.1 Typha orientalis chloroplast, complete genome Parameters: 2 7 7 80 10 50 500 Length: 160969 Tables: 1 2 This is table 1 of 2 ( 122 repeats found ) Click on indices to view alignment Table Explanation ----------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 3328--3360 15 2.2 15 94 0 57 36 0 9 54 1.32 5469--5493 13 1.9 13 100 0 50 8 16 4 72 1.24 5498--5523 12 2.2 12 100 0 52 61 7 15 15 1.55 7195--7243 24 2.0 24 100 0 98 40 20 0 38 1.53 8712--8749 17 2.2 17 90 0 58 23 5 5 65 1.34 8763--8793 15 2.1 15 100 0 62 45 6 0 48 1.28 8775--8831 26 2.2 25 84 9 78 45 1 3 49 1.29 8789--8831 14 3.2 14 80 12 63 46 0 4 48 1.22 8855--8881 13 2.1 13 100 0 54 29 14 0 55 1.40 9002--9054 17 3.2 16 81 10 63 60 1 1 35 1.19 8965--9037 28 2.8 26 80 15 73 58 2 0 38 1.12 8968--9051 15 5.5 15 75 16 75 59 2 1 36 1.18 9100--9158 31 1.9 31 86 6 84 57 0 0 42 0.98 9100--9192 16 5.9 16 84 10 95 59 0 0 40 0.98 9150--9204 7 8.6 7 74 23 50 63 0 0 36 0.95 9161--9216 14 4.1 14 81 2 69 60 0 0 39 0.97 9104--9212 19 5.8 19 66 22 52 59 0 0 40 0.97 9118--9201 33 2.6 33 83 10 95 61 0 0 38 0.96 9211--9255 15 2.9 15 83 9 56 62 2 2 33 1.20 9699--9810 2 60.0 2 69 16 53 53 2 0 42 1.21 9699--9770 11 6.5 11 69 18 51 47 4 0 48 1.21 9699--9738 11 3.4 13 80 19 52 45 0 0 55 0.99 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 9699--9779 9 8.7 9 75 20 69 46 3 1 48 1.27 9777--9850 22 3.4 22 81 3 87 77 0 0 22 0.78 9777--9847 4 18.2 4 72 21 53 76 0 0 23 0.79 9815--9850 11 3.2 11 88 4 54 86 0 0 13 0.58 9778--9847 35 2.0 36 88 2 106 75 0 0 24 0.80 14600--14632 16 2.1 16 100 0 66 45 6 12 36 1.66 15341--15370 13 2.3 13 100 0 60 53 6 6 33 1.53 15329--15383 19 2.9 19 78 10 58 52 7 3 36 1.47 15361--15403 22 2.0 22 85 0 59 51 2 2 44 1.27 15313--15402 16 5.2 16 75 12 56 51 4 4 40 1.42 15323--15435 6 17.8 6 72 12 57 53 3 5 38 1.41 15372--15436 26 2.5 27 80 12 73 53 0 6 40 1.26 15391--15430 19 2.0 20 90 4 64 57 0 7 35 1.27 15402--15471 36 2.0 35 88 2 104 50 1 12 35 1.50 15529--15563 17 2.1 17 94 0 61 31 14 5 48 1.67 17848--17877 15 2.1 15 93 6 53 26 6 20 46 1.75 22135--22164 14 2.1 14 93 0 51 23 6 16 53 1.66 28436--28474 19 2.1 19 95 0 69 30 17 5 46 1.70 31365--31396 16 2.0 16 100 0 64 37 12 6 43 1.68 33688--33735 26 1.9 25 84 16 64 27 4 12 56 1.54 34258--34295 8 4.6 8 90 6 58 44 10 5 39 1.61 34258--34295 17 2.3 16 90 4 58 44 10 5 39 1.61 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 34239--34298 8 7.8 8 82 14 54 41 10 8 40 1.69 38882--38920 19 2.1 19 90 0 60 38 12 7 41 1.72 39131--39170 14 3.0 14 89 7 57 30 35 0 35 1.58 39170--39208 19 2.1 18 95 4 69 38 0 15 46 1.46 48812--48869 13 4.2 13 76 10 53 31 1 5 62 1.27 48821--48870 17 3.0 17 85 2 57 36 2 4 58 1.29 48941--48985 15 3.0 15 93 0 81 31 2 13 53 1.52 49337--49407 28 2.6 27 80 8 72 47 2 5 43 1.41 49378--49446 20 3.3 19 79 18 75 52 1 5 40 1.34 49391--49446 14 3.9 14 78 19 62 50 1 7 41 1.40 49376--49458 11 7.6 11 72 17 66 51 2 6 39 1.39 49376--49446 22 3.3 22 77 18 85 52 1 5 40 1.34 49369--49446 2 40.0 2 71 27 53 51 1 5 42 1.32 51624--51674 25 2.0 25 100 0 102 49 3 19 27 1.66 55875--55906 15 2.1 15 94 0 55 65 9 6 18 1.42 55922--55950 12 2.3 13 94 5 51 24 3 24 48 1.66 58357--58404 23 2.1 23 84 3 62 54 10 16 18 1.70 61513--61545 15 2.2 15 100 0 66 42 6 21 30 1.77 62935--62987 15 3.5 14 78 12 52 45 0 1 52 1.11 62972--63038 34 1.9 35 93 3 118 31 14 2 50 1.58 63208--63317 40 2.7 39 94 4 184 22 3 0 73 0.98 63208--63314 4 29.0 4 70 23 51 22 2 0 74 0.94 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 63239--63314 21 3.7 22 81 15 108 19 1 0 78 0.81 63327--63477 2 82.0 2 73 18 96 39 0 0 59 1.07 63329--63474 7 20.0 7 76 18 113 38 0 0 60 1.07 63324--63474 15 9.7 15 79 14 155 38 0 0 60 1.07 63326--63477 13 11.8 13 73 17 115 38 0 0 59 1.07 63336--63474 31 3.8 37 77 21 134 37 0 0 61 1.07 66359--66385 14 1.9 14 100 0 54 37 25 7 29 1.83 67505--67539 18 1.9 18 100 0 70 40 20 5 34 1.76 69877--69910 15 2.2 16 89 5 52 73 11 0 14 1.10 69938--69977 9 4.8 9 76 17 50 55 0 2 42 1.13 69935--69967 16 2.1 16 100 0 66 54 0 6 39 1.25 73023--73066 21 2.1 21 86 0 61 34 22 11 31 1.90 84566--84590 6 4.2 6 100 0 50 16 0 0 84 0.63 85705--85733 14 2.1 14 100 0 58 20 6 6 65 1.40 85678--85711 1 34.0 1 87 0 50 0 2 2 94 0.38 87338--87370 7 5.0 7 92 7 52 24 0 0 75 0.80 87332--87370 13 3.0 13 85 11 53 23 2 0 74 0.94 87332--87369 19 2.0 19 94 0 67 21 2 0 76 0.91 87338--87398 19 3.0 23 76 21 57 32 0 0 67 0.91 87366--87403 10 3.9 10 86 6 60 44 0 0 55 0.99 87364--87401 19 2.0 19 100 0 76 42 0 0 57 0.98 87415--87440 13 2.0 13 100 0 52 46 7 0 46 1.31 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 87468--87497 15 2.0 15 93 0 51 40 10 0 50 1.36 89151--89232 26 3.2 26 96 1 148 34 10 2 52 1.50 89152--89259 52 2.1 51 81 8 121 37 9 1 50 1.45 94481--94563 21 3.8 21 91 4 121 14 27 10 46 1.78 94502--94570 21 3.3 21 95 0 120 13 31 8 46 1.73 96920--97010 15 5.6 17 71 16 77 31 7 24 36 1.84 96927--97003 24 3.2 24 96 0 145 32 9 24 33 1.87 99141--99186 22 2.1 22 95 0 83 63 2 17 17 1.42 99975--100025 25 2.0 25 100 0 102 39 5 19 35 1.76 105200--105224 12 2.1 12 100 0 50 16 24 28 32 1.96 118324--118350 13 2.1 13 100 0 54 29 7 14 48 1.71 118577--118608 16 2.0 16 100 0 64 31 0 18 50 1.48 118620--118652 18 1.9 17 88 11 50 57 0 6 36 1.23 118659--118703 18 2.6 18 89 6 67 51 15 8 24 1.72 123061--123098 18 2.1 18 90 0 58 44 7 13 34 1.72 123371--123407 19 1.9 19 100 0 74 32 0 8 59 1.27 123394--123523 11 12.2 11 71 18 87 35 0 2 62 1.08 123395--123467 29 2.5 30 84 4 94 35 0 1 63 1.04 123394--123516 35 3.4 35 79 13 108 35 0 2 61 1.09 123413--123587 14 12.9 14 69 24 76 40 0 1 58 1.05 123341--123513 9 19.4 9 66 21 64 35 1 3 59 1.22 123413--123587 29 6.3 28 69 19 82 40 0 1 58 1.05 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 123510--123583 27 2.8 26 75 16 73 47 0 0 52 1.00 123427--123599 11 15.9 11 72 19 73 41 1 1 56 1.14 129802--129835 17 2.0 17 100 0 68 29 5 5 58 1.45 144864--144888 12 2.1 12 100 0 50 32 28 24 16 1.96 150063--150113 25 2.0 25 100 0 102 35 19 5 39 1.76 150063--150121 25 2.4 25 91 5 84 37 16 6 38 1.76 150902--150947 22 2.1 22 95 0 83 17 17 2 63 1.42 153078--153168 15 5.6 17 71 16 77 36 24 7 31 1.84 153085--153161 24 3.2 24 96 0 145 33 24 9 32 1.87 155518--155586 21 3.3 21 95 0 120 46 8 31 13 1.73 ----------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Tables: 1 2