NC_050829.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_050829.1 Polygala tenuifolia chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 165423
Tables: 1
This is table 1 of 1 ( 90 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6--37 16 2.0 16 100 0 64 56 12 6 25 1.59
3700--3741 22 1.9 22 85 0 57 42 14 19 23 1.87
4622--4666 22 2.0 22 95 0 81 22 24 6 46 1.75
9614--9646 16 2.1 16 100 0 66 69 0 0 30 0.88
10148--10181 17 2.0 17 100 0 68 41 5 11 41 1.66
13322--13355 14 2.5 14 85 4 52 35 20 2 41 1.68
14698--14724 13 2.1 13 100 0 54 14 0 7 77 0.97
15668--15753 24 3.8 23 75 14 81 25 3 0 70 1.02
15682--15752 24 3.0 23 84 12 83 26 4 0 69 1.07
15648--15752 11 8.5 13 68 17 64 25 2 1 69 1.12
15648--15752 4 26.8 4 71 18 53 25 2 1 69 1.12
17037--17082 11 4.5 11 78 13 53 43 4 0 52 1.21
17034--17074 20 2.0 20 100 0 82 39 4 0 56 1.21
17350--17426 26 2.9 27 79 11 88 51 1 6 40 1.36
17352--17471 40 3.4 36 76 19 103 53 2 5 39 1.36
17390--17463 20 3.8 20 94 5 125 51 4 4 40 1.40
23671--23708 19 2.0 19 94 0 67 39 10 15 34 1.82
24102--24146 2 23.5 2 86 8 67 48 0 0 51 1.00
24102--24149 17 2.9 17 90 6 73 47 0 0 52 1.00
24102--24178 19 4.2 20 81 17 87 44 0 0 55 0.99
26345--26393 17 2.9 17 93 0 80 42 10 8 38 1.68
37479--37503 13 1.9 13 100 0 50 56 0 28 16 1.41
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
46940--46969 15 2.0 15 100 0 60 53 6 13 26 1.64
59214--59244 16 2.0 16 93 6 55 48 12 0 38 1.42
63248--63288 21 2.0 21 95 0 73 17 7 4 70 1.28
68410--68443 16 2.1 17 94 5 61 41 11 0 47 1.40
68526--68601 18 4.1 18 83 13 91 35 15 10 38 1.82
71227--71270 6 7.3 6 78 0 52 18 22 0 59 1.38
71227--71272 18 2.6 18 86 6 58 19 23 0 56 1.42
71244--71291 18 2.6 19 87 6 64 22 25 2 50 1.60
71275--71351 30 2.6 30 82 0 100 28 24 3 42 1.72
71337--71376 18 2.2 18 90 0 62 20 22 2 55 1.56
73920--73971 25 2.1 25 96 0 95 36 11 17 34 1.86
78992--79026 15 2.2 16 90 5 54 37 5 2 54 1.39
81972--82009 19 2.0 19 100 0 76 52 5 0 42 1.24
85723--85775 27 2.0 27 85 14 74 64 0 15 20 1.29
85723--85774 12 4.0 13 73 26 56 63 0 15 21 1.31
86664--86711 24 2.0 24 95 0 87 18 8 31 41 1.80
88410--88466 21 2.7 21 91 0 87 21 28 19 31 1.97
88541--88609 21 3.3 21 85 4 95 11 23 10 55 1.66
90244--90316 30 2.4 30 93 0 119 35 31 4 28 1.76
90549--90584 18 2.0 18 100 0 72 27 16 11 44 1.82
90970--91073 9 12.2 9 79 11 103 31 7 31 28 1.85
90970--91073 24 4.1 24 85 3 91 31 7 31 28 1.85
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
92418--92490 9 8.1 9 73 0 56 28 23 21 26 1.99
92451--92503 18 2.9 18 75 5 54 28 16 24 30 1.97
92550--92598 9 5.4 9 87 0 71 28 22 28 20 1.98
100489--100528 20 2.0 20 100 0 80 45 15 25 15 1.84
102165--102259 32 3.0 32 95 0 172 34 12 21 31 1.91
111500--111561 18 3.1 19 76 24 65 27 41 8 22 1.82
111505--111549 24 1.9 24 95 4 83 26 46 6 20 1.75
111969--112047 18 4.4 18 90 0 122 45 15 21 17 1.85
111989--112065 36 2.1 36 80 0 82 50 15 16 16 1.78
111969--112079 54 2.1 54 81 6 127 50 15 18 15 1.78
113295--113339 22 2.0 23 83 12 58 80 2 8 8 1.00
113306--113339 10 3.6 9 88 11 50 85 0 5 8 0.75
113964--114053 30 3.0 30 93 0 153 54 16 16 12 1.71
114570--114621 21 2.5 21 96 0 95 61 3 30 3 1.32
120379--120412 16 2.1 16 89 10 52 44 8 11 35 1.72
122207--122245 20 2.0 20 85 10 53 56 23 0 20 1.42
128711--128744 15 2.1 16 89 10 52 35 11 8 44 1.72
134502--134553 21 2.5 21 96 0 95 3 30 3 61 1.32
135070--135159 30 3.0 30 93 0 153 12 16 16 54 1.71
135784--135817 9 3.7 9 88 7 50 8 5 0 85 0.75
135784--135828 22 2.0 23 83 12 58 8 8 2 80 1.00
137076--137154 18 4.4 18 90 0 122 17 21 15 45 1.85
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
137562--137598 18 2.1 18 100 0 74 21 10 37 29 1.88
137562--137623 18 3.1 19 76 24 65 22 8 41 27 1.82
137574--137618 24 1.9 24 95 4 83 20 6 46 26 1.75
146664--146719 29 2.1 25 84 15 69 19 23 10 46 1.81
146864--146958 32 3.0 32 95 0 172 31 21 12 34 1.91
148595--148634 20 2.0 20 100 0 80 15 25 15 45 1.84
150202--150234 14 2.2 16 89 10 52 81 0 3 15 0.80
156525--156573 9 5.4 9 87 0 71 20 28 22 28 1.98
156633--156705 9 8.1 9 73 0 56 26 21 23 28 1.99
156620--156672 18 2.9 18 75 5 54 30 24 16 28 1.97
156647--156733 45 1.9 45 83 0 111 24 22 22 29 1.99
156901--156968 33 2.1 33 85 0 91 7 42 16 33 1.76
158096--158153 9 6.4 9 91 0 98 24 32 10 32 1.89
158050--158153 18 6.1 18 78 10 103 28 31 7 31 1.85
158043--158149 24 4.2 27 83 7 109 28 31 10 29 1.90
158072--158157 18 4.9 18 81 7 106 29 31 8 31 1.86
158110--158163 27 2.0 27 85 0 72 31 31 7 29 1.85
158539--158574 18 2.0 18 100 0 72 44 11 16 27 1.82
158807--158879 30 2.4 30 93 0 119 28 4 31 35 1.76
160516--160582 21 3.1 22 85 10 95 55 8 23 11 1.64
160657--160713 21 2.7 21 91 0 87 31 19 28 21 1.97
162412--162459 24 2.0 24 95 0 87 41 31 8 18 1.80
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
163349--163400 12 4.0 13 73 26 56 21 15 0 63 1.31
163348--163400 27 2.0 27 85 14 74 20 15 0 64 1.29
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!