NC_050853.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_050853.1 Saururus chinensis chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 161489
Tables: 1
This is table 1 of 1 ( 39 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
8724--8754 14 2.1 15 94 5 55 48 6 9 35 1.62
15717--15748 16 2.0 16 100 0 64 25 18 0 56 1.42
15746--15786 2 21.0 2 90 5 66 48 0 2 48 1.14
28995--29041 16 3.0 16 90 6 78 42 2 19 36 1.63
32253--32299 25 1.9 24 91 4 76 27 6 4 61 1.39
33568--33616 13 3.8 13 78 10 55 22 4 0 73 1.00
33573--33626 26 2.1 26 96 0 99 20 7 0 72 1.08
33583--33626 13 3.4 13 77 22 56 20 9 0 70 1.14
38947--38996 21 2.4 21 80 3 57 58 10 12 20 1.62
47297--47323 14 1.9 14 100 0 54 37 14 18 29 1.91
49075--49101 14 1.9 14 100 0 54 29 11 0 59 1.32
49095--49127 17 1.9 17 93 0 57 51 0 6 42 1.26
49124--49157 17 2.0 17 94 0 59 50 11 5 32 1.63
49164--49207 16 2.6 18 79 20 58 47 0 4 47 1.22
49169--49207 16 2.4 16 95 0 69 48 0 5 46 1.24
53810--53841 13 2.5 13 100 0 64 31 0 9 59 1.29
54060--54097 18 2.1 18 85 9 51 31 5 23 39 1.77
60424--60453 15 2.0 15 93 0 51 36 6 23 33 1.81
62591--62620 15 2.0 15 93 0 51 60 3 10 26 1.45
64906--64944 2 19.5 2 84 10 53 43 2 2 51 1.29
69261--69294 17 2.0 17 100 0 68 29 23 5 41 1.78
70160--70189 15 2.0 15 100 0 60 33 20 13 33 1.91
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
72456--72499 21 2.1 21 82 0 52 34 27 11 27 1.91
85198--85234 17 2.2 17 90 0 56 40 5 32 21 1.76
88909--88939 15 2.1 15 93 0 53 48 3 12 35 1.58
93675--93760 24 3.7 24 92 4 142 13 23 11 51 1.74
96153--96249 18 5.7 18 76 14 107 32 7 27 31 1.84
96163--96241 9 9.4 9 70 18 55 34 7 27 30 1.85
96148--96224 24 3.2 24 98 0 145 33 7 27 31 1.85
113045--113095 25 2.0 25 100 0 102 41 7 0 50 1.31
126194--126229 10 3.9 10 79 20 51 30 11 0 58 1.33
126196--126229 17 2.0 17 100 0 68 29 11 0 58 1.33
130393--130428 18 2.0 18 88 0 54 33 16 27 22 1.95
137254--137304 25 2.0 25 100 0 102 50 0 7 41 1.31
154108--154186 9 9.4 9 67 20 55 30 27 7 34 1.85
154100--154196 18 5.7 18 76 14 107 31 27 7 32 1.84
154125--154201 24 3.2 24 98 0 145 31 27 7 33 1.85
156589--156674 24 3.7 24 92 4 142 51 11 23 13 1.74
161410--161440 15 2.1 15 93 0 53 35 12 3 48 1.58
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Tables: 1
The End!