NC_050881.1.fas.2.7.7.80.10.50.500.1.html

    Tandem Repeats Finder Program written by:

    Gary Benson
    Program in Bioinformatics
    Boston University
    Version 4.09

    Please cite:
    G. Benson,
    "Tandem repeats finder: a program to analyze DNA sequences"
    Nucleic Acid Research(1999)
    Vol. 27, No. 2, pp. 573-580.

    Sequence: NC_050881.1 Rhodiola crenulata chloroplast, complete genome
    Parameters: 2 7 7 80 10 50 500
    Length:  151912

    Tables:   1   

    This is table  1  of  1  ( 22 repeats found )

    Click on indices to view alignment

Table Explanation

  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
  Indices                            Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T    Entropy
                                     Size     Number   Size        Matches   Indels                                (0-2)

  4752--4784                         16       2.1      16          88        11        50      57   3    21   18   1.53

  7969--8001                         16       2.1      16          94        0         57      42   6    9    42   1.61

  9130--9161                         16       2.0      16          100       0         64      25   12   6    56   1.59

  10160--10213                       2        28.5     2           74        10        51      46   0    3    50   1.19

  10160--10208                       20       2.5      20          93        6         82      46   0    4    48   1.20

  10155--10204                       16       2.9      16          76        23        57      46   0    4    50   1.20

  27758--27786                       14       2.1      14          100       0         58      20   6    0    72   1.07

  30408--30463                       10       5.5      10          91        4         94      53   17   0    28   1.44

  36784--36809                       13       2.0      13          100       0         52      46   0    7    46   1.31

  36807--36850                       13       3.5      13          76        17        56      52   0    4    43   1.22

  36794--36854                       25       2.6      24          87        7         81      49   0    4    45   1.23

  82429--82500                       22       3.3      22          98        0         135     31   8    0    59   1.27

  87944--88009                       21       3.1      21          80        0         78      12   24   9    54   1.66

  89966--89995                       15       2.0      15          93        0         51      26   10   13   50   1.73

  90386--90436                       18       2.8      19          85        5         61      31   9    31   27   1.89

  98423--98451                       14       2.0      15          93        6         51      34   0    17   48   1.47

  107827--107949                     61       2.0      61          96        0         228     25   13   21   39   1.89

  120103--120146                     22       1.9      23          86        9         63      38   29   11   20   1.87

  127057--127179                     61       2.0      61          96        0         228     39   21   13   25   1.89

  136555--136583                     14       2.0      15          93        6         51      48   17   0    34   1.47

  145011--145040                     15       2.0      15          93        0         51      50   13   10   26   1.73

  146997--147062                     21       3.1      21          80        0         78      54   9    24   12   1.66
  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------

    Tables:   1   

The End!