NC_050925.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_050925.1 Turpinia arguta chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 160139
Tables: 1
This is table 1 of 1 ( 40 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
397--440 22 2.0 22 95 0 79 43 11 13 31 1.80
5798--5826 14 2.1 14 100 0 58 34 27 6 31 1.83
9747--9795 16 3.1 16 100 0 98 14 12 18 55 1.69
11458--11501 19 2.4 17 79 17 52 40 6 0 52 1.28
14271--14300 15 2.0 15 93 0 51 20 13 10 56 1.65
17075--17105 15 2.1 15 93 0 53 29 6 3 61 1.37
17977--18012 18 2.0 18 94 0 63 25 19 0 55 1.43
28711--28736 12 2.2 12 100 0 52 34 15 7 42 1.75
29640--29666 14 1.9 14 100 0 54 66 11 7 14 1.43
48787--48825 13 2.7 15 88 7 55 43 20 7 28 1.79
50679--50720 12 3.5 12 84 9 50 52 2 9 35 1.47
51074--51101 14 2.0 14 100 0 56 35 7 0 57 1.26
52777--52821 22 2.0 22 100 0 90 28 13 8 48 1.72
55556--55597 21 2.0 21 100 0 84 42 4 38 14 1.66
63941--63981 16 2.8 16 85 10 52 34 17 2 46 1.61
68234--68262 13 2.2 13 100 0 58 68 0 6 24 1.13
73285--73321 19 1.9 19 88 0 56 48 8 2 40 1.47
73520--73558 21 1.9 21 89 5 62 33 25 7 33 1.84
84977--85025 24 2.0 24 96 0 89 28 26 16 28 1.97
94399--94487 21 4.1 21 81 5 81 13 22 10 53 1.69
94419--94487 21 3.3 21 83 2 86 13 23 8 55 1.65
96871--96912 18 2.3 18 100 0 84 28 11 26 33 1.92
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
99868--99920 15 3.0 19 78 21 78 37 13 0 49 1.42
99874--99928 15 3.4 16 81 18 69 40 7 0 52 1.29
105107--105144 18 2.1 18 100 0 76 21 10 5 63 1.46
113156--113221 32 2.1 32 94 0 114 40 22 9 27 1.84
114808--114985 87 2.0 87 96 0 329 25 19 20 35 1.95
115908--115947 21 1.9 21 84 0 53 65 2 7 25 1.32
118616--118652 16 2.3 16 90 0 56 37 2 2 56 1.28
118623--118657 16 2.2 16 100 0 70 31 0 5 62 1.18
119321--119380 20 3.0 20 100 0 120 45 30 5 20 1.72
124289--124341 22 2.5 22 87 3 72 39 11 7 41 1.69
125851--125890 19 2.1 19 90 0 62 32 2 20 45 1.64
134780--134957 87 2.0 87 96 0 329 35 20 19 25 1.95
136544--136609 32 2.1 32 94 0 114 27 9 22 40 1.84
144621--144658 18 2.1 18 100 0 76 63 5 10 21 1.46
149837--149891 15 3.4 16 81 18 69 52 0 7 40 1.29
149845--149897 15 3.0 19 78 21 78 49 0 13 37 1.42
152853--152894 18 2.3 18 100 0 84 33 26 11 28 1.92
155278--155346 21 3.3 21 83 2 86 55 8 23 13 1.65
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Tables: 1
The End!