NC_050926.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_050926.1 Polygonatum odoratum chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 154468
Tables: 1
This is table 1 of 1 ( 31 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6557--6581 12 2.1 12 100 0 50 44 8 8 40 1.63
7225--7255 15 2.1 15 100 0 62 16 25 0 58 1.38
8428--8486 10 5.9 10 81 0 73 61 10 0 28 1.29
8427--8486 20 3.0 20 100 0 120 60 10 0 30 1.30
35109--35138 14 2.1 14 100 0 60 20 6 23 50 1.71
44109--44138 15 2.0 15 93 0 51 43 0 36 20 1.52
45853--45895 14 3.0 14 83 12 52 44 11 0 44 1.40
50076--50131 27 2.0 28 86 10 80 53 10 3 32 1.53
50209--50242 13 2.6 14 90 9 54 38 0 0 61 0.96
56527--56553 14 1.9 14 100 0 54 62 7 14 14 1.51
60178--60207 10 3.1 10 90 9 53 63 6 0 30 1.20
66548--66592 11 4.3 11 88 11 67 48 0 0 51 1.00
66547--66587 20 2.0 20 95 0 73 46 0 0 53 1.00
67362--67402 21 2.0 21 90 4 66 68 4 2 24 1.22
67478--67521 21 2.1 21 91 0 70 31 25 11 31 1.91
78848--78893 24 1.9 24 90 0 74 26 34 13 26 1.92
78910--78961 25 2.0 26 96 3 97 26 19 3 50 1.65
86035--86086 23 2.3 23 96 3 97 46 7 21 25 1.77
88522--88586 24 2.7 24 97 0 121 13 24 12 49 1.77
90943--91009 24 3.6 18 74 25 59 32 7 22 37 1.82
90950--91002 24 2.2 24 96 0 97 33 9 22 33 1.86
112678--112710 17 2.0 16 94 5 57 30 6 18 45 1.73
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
113477--113528 19 2.7 19 84 3 68 34 1 1 61 1.18
117570--117629 17 3.5 17 77 11 68 28 3 1 66 1.17
117584--117639 29 1.9 29 82 7 69 26 1 7 64 1.29
120481--120522 17 2.3 18 80 16 50 47 11 4 35 1.61
127185--127213 15 1.9 15 100 0 58 34 6 6 51 1.55
146877--146943 24 3.6 18 74 25 59 37 22 7 32 1.82
146884--146936 24 2.2 24 96 0 97 33 22 9 33 1.86
149300--149364 24 2.7 24 97 0 121 49 12 24 13 1.77
151800--151851 23 2.3 23 96 3 97 25 21 7 46 1.77
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Tables: 1
The End!