NC_051556.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_051556.1 Catalpa bungei chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 158210
Tables: 1
This is table 1 of 1 ( 36 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
8499--8531 14 2.4 14 95 5 59 18 9 12 60 1.57
15845--15881 19 1.9 19 94 0 65 37 13 8 40 1.74
30213--30238 13 2.0 13 100 0 52 38 7 15 38 1.76
32070--32100 13 2.4 13 100 0 62 41 6 12 38 1.69
42451--42483 13 2.6 13 90 4 50 33 0 15 51 1.43
42727--42779 26 2.1 25 82 10 63 60 5 3 30 1.37
51425--51452 14 2.0 14 100 0 56 14 7 7 71 1.29
58575--58618 21 2.1 21 91 0 70 31 9 31 27 1.88
60699--60786 21 4.2 21 97 0 158 32 26 11 29 1.91
68249--68285 18 2.1 18 89 0 56 5 24 0 70 1.08
68999--69039 21 2.0 21 95 0 73 29 26 9 34 1.88
80206--80252 24 2.0 24 86 0 67 29 29 14 25 1.95
85543--85592 25 2.0 25 96 0 91 40 18 12 30 1.86
86862--86920 19 3.1 19 100 0 118 42 10 5 42 1.60
89196--89243 24 2.1 22 84 7 60 12 22 10 54 1.68
89218--89285 21 3.2 21 73 8 66 11 20 8 58 1.59
91655--91726 18 4.0 18 90 0 108 27 15 23 33 1.95
91653--91721 36 1.9 36 93 0 120 27 13 24 34 1.92
92977--93039 21 3.0 21 100 0 126 38 9 38 14 1.78
99579--99613 17 2.0 18 94 5 63 28 0 22 48 1.51
107532--107592 31 2.0 31 93 0 104 40 21 9 27 1.85
109060--109183 24 5.3 24 96 3 220 54 8 15 21 1.66
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
116934--116972 20 2.0 20 85 10 53 56 23 0 20 1.42
119117--119157 20 2.0 20 100 0 82 34 14 14 36 1.87
122468--122502 15 2.4 15 90 4 54 42 5 5 45 1.51
125956--125987 16 2.0 16 100 0 64 50 12 18 18 1.78
133956--134079 24 5.3 24 96 3 220 21 15 8 54 1.66
135547--135607 31 2.0 31 93 0 104 27 9 21 40 1.85
143526--143560 17 2.0 18 94 5 63 48 22 0 28 1.51
143553--143598 23 2.0 23 86 0 65 60 6 6 26 1.46
150100--150162 21 3.0 21 100 0 126 14 38 9 38 1.78
151418--151486 18 3.8 18 92 0 120 34 24 13 27 1.92
153873--153925 21 2.5 21 79 11 63 62 11 16 9 1.54
153854--153943 24 4.1 22 72 13 69 55 10 22 12 1.66
156219--156277 19 3.1 19 100 0 118 42 5 10 42 1.60
157547--157596 25 2.0 25 96 0 91 30 12 18 40 1.86
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Tables: 1
The End!