NC_052700.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_052700.1 Murraya paniculata chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 160280
Tables: 1
This is table 1 of 1 ( 31 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
16--41 13 2.0 13 100 0 52 23 7 30 38 1.83
469--501 13 2.4 14 85 10 50 51 27 12 9 1.69
4890--4919 14 2.1 14 100 0 60 66 0 6 26 1.16
8784--8808 12 2.1 12 100 0 50 60 0 24 16 1.36
8821--8851 16 1.9 16 93 0 53 48 9 12 29 1.73
10532--10563 16 2.0 16 100 0 64 31 18 37 12 1.88
10687--10731 15 2.7 18 73 20 51 51 0 0 48 1.00
39100--39131 16 1.9 17 93 6 57 75 0 3 21 0.95
39202--39283 25 3.2 25 75 15 69 58 1 6 34 1.31
39804--39830 13 2.1 13 100 0 54 70 14 7 7 1.32
45543--45576 16 2.1 16 94 0 59 64 5 2 26 1.30
60942--61001 18 3.3 18 100 0 120 45 11 23 20 1.83
62457--62505 25 2.0 24 92 4 80 44 8 4 42 1.53
68543--68569 13 2.1 13 100 0 54 51 7 7 33 1.58
71902--71940 21 1.9 21 89 5 62 33 25 10 30 1.89
72194--72225 16 2.0 16 100 0 64 50 12 12 25 1.75
81046--81076 16 1.9 16 100 0 62 12 9 0 77 0.99
88781--88826 23 2.0 23 100 0 92 47 17 8 26 1.76
92953--93027 21 3.2 24 70 16 68 10 24 8 57 1.59
95407--95442 18 2.0 18 100 0 72 27 11 27 33 1.91
103202--103235 17 2.0 17 94 0 59 5 8 0 85 0.75
103729--103766 18 2.1 18 95 0 67 23 7 5 63 1.42
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
111850--111943 32 2.9 32 98 0 179 38 25 9 26 1.87
116909--116952 22 2.0 22 95 0 79 43 4 15 36 1.68
117273--117297 11 2.3 11 100 0 50 8 12 8 72 1.29
133219--133243 12 2.1 12 100 0 50 32 24 0 44 1.54
135943--136036 32 2.9 32 98 0 179 26 9 25 38 1.87
144120--144157 18 2.1 18 95 0 67 63 5 7 23 1.42
144651--144684 17 2.0 17 94 0 59 85 0 8 5 0.75
152444--152479 18 2.0 18 100 0 72 33 27 11 27 1.91
159060--159105 23 2.0 23 100 0 92 26 8 17 47 1.76
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Tables: 1
The End!