NC_052745.1.fas.2.7.7.80.10.50.500.1.html Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: NC_052745.1 Euphorbia maculata chloroplast, complete genome Parameters: 2 7 7 80 10 50 500 Length: 162685 Tables: 1 2 This is table 1 of 2 ( 152 repeats found ) Click on indices to view alignment Table Explanation ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 165--191 13 2.1 13 100 0 54 48 14 0 37 1.45 296--330 17 2.1 17 100 0 70 40 11 5 42 1.65 5024--5063 19 2.2 18 95 4 71 22 15 2 60 1.47 5032--5080 23 2.2 22 85 10 64 24 14 4 57 1.55 5360--5434 12 6.0 12 75 14 62 32 6 4 57 1.43 5733--5767 15 2.3 15 90 0 61 71 5 2 20 1.19 5803--5845 20 2.1 20 87 12 61 79 2 9 9 1.03 5803--5845 10 4.3 10 82 8 52 79 2 9 9 1.03 6879--6922 16 2.8 16 93 3 72 59 6 0 34 1.24 7932--7994 12 5.2 12 80 14 67 63 0 14 22 1.30 7932--7994 25 2.6 23 85 12 74 63 0 14 22 1.30 8454--8490 18 2.1 18 100 0 74 56 0 5 37 1.22 8502--8540 20 2.0 20 89 0 60 56 0 15 28 1.40 9561--9594 17 2.1 16 88 5 50 58 2 5 32 1.37 9737--9779 10 4.6 10 83 16 65 60 0 0 39 0.97 9722--9781 27 2.2 28 85 14 90 60 0 0 40 0.97 9745--9780 17 2.1 17 100 0 72 58 0 0 41 0.98 10128--10176 16 3.1 16 88 2 73 53 0 2 44 1.12 10126--10179 18 3.1 18 81 13 67 51 0 1 46 1.11 10435--10477 18 2.5 18 88 7 63 30 4 0 65 1.13 10466--10512 23 2.0 23 83 4 58 19 6 2 72 1.17 10478--10519 12 3.6 12 83 6 50 16 7 2 73 1.15 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 12746--12775 15 1.9 15 93 6 51 66 6 6 20 1.38 15951--15990 21 1.9 21 94 0 71 20 7 2 70 1.24 27554--27579 12 2.2 12 100 0 52 38 7 0 53 1.30 27897--27994 52 1.9 51 87 6 144 29 6 1 63 1.25 27995--28040 22 2.1 22 84 8 58 47 0 4 47 1.21 29625--29659 18 1.9 18 88 0 52 34 2 11 51 1.53 31531--31576 15 3.1 15 84 9 58 45 4 8 41 1.55 32057--32091 17 2.1 17 100 0 70 20 5 17 57 1.60 33370--33398 15 1.9 15 100 0 58 86 0 6 6 0.72 33390--33429 17 2.4 17 91 0 62 55 7 5 32 1.50 33436--33475 21 1.9 21 100 0 80 37 12 0 50 1.41 33496--33539 23 1.9 23 95 0 79 52 4 0 43 1.22 33496--33537 13 3.5 13 78 18 54 52 4 0 42 1.22 33747--33799 24 2.5 19 74 25 61 41 3 13 41 1.62 33754--33826 24 3.1 24 84 5 96 42 5 10 41 1.63 33767--33835 22 3.0 22 82 4 75 42 5 8 43 1.59 33862--33889 14 2.0 14 100 0 56 42 0 21 35 1.53 34372--34425 27 2.0 27 85 0 72 46 11 7 35 1.67 34405--34435 16 1.9 16 93 0 53 51 0 3 45 1.17 34718--34765 25 1.9 25 86 0 69 64 4 20 10 1.41 38686--38725 12 3.3 12 82 0 53 40 2 0 57 1.12 38963--38998 13 2.8 13 91 0 54 47 13 11 27 1.77 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 39073--39126 25 2.1 26 83 10 67 20 9 3 66 1.35 39118--39156 20 2.0 20 89 0 60 48 0 15 35 1.45 39230--39268 17 2.4 16 91 4 60 64 2 2 30 1.21 39230--39275 13 3.5 13 87 3 65 65 2 2 30 1.16 39231--39277 7 6.4 7 77 18 51 65 2 2 29 1.15 39474--39511 20 1.9 20 100 0 76 39 10 0 50 1.37 39566--39611 18 2.5 19 89 10 69 34 0 4 60 1.16 39566--39619 18 2.9 20 84 10 62 37 0 5 57 1.22 45451--45485 17 2.1 17 100 0 70 51 0 0 48 1.00 45714--45796 18 4.4 18 86 8 103 37 0 3 59 1.15 45731--45797 15 4.6 14 80 12 73 37 0 1 61 1.05 45728--45797 21 3.1 23 80 15 76 37 0 1 61 1.05 45722--45814 18 5.1 18 81 13 77 34 1 2 62 1.14 45749--45797 25 2.0 25 91 0 80 36 0 2 61 1.08 45769--45820 17 3.2 17 84 12 65 28 3 1 65 1.21 45728--45814 10 8.6 10 72 23 58 34 1 1 63 1.10 45889--46094 9 22.2 9 68 15 75 38 3 0 56 1.22 45906--45969 7 8.9 7 73 24 53 53 3 0 43 1.16 45924--45970 16 2.9 16 96 0 85 48 4 0 46 1.21 45946--46000 28 2.0 27 86 10 76 36 3 0 60 1.15 45924--46015 35 2.8 33 79 11 89 40 3 1 55 1.23 46006--46030 12 2.1 12 100 0 50 32 8 0 60 1.26 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 45983--46036 28 2.0 26 85 7 72 29 5 1 62 1.28 46018--46069 20 2.7 18 82 14 59 30 3 0 65 1.10 46035--46069 17 1.9 18 88 11 54 31 2 0 65 1.07 46057--46096 20 2.0 20 100 0 80 35 5 5 55 1.44 46084--46125 20 2.2 20 95 4 77 30 7 4 57 1.47 46126--46161 14 2.6 14 86 4 56 63 0 11 25 1.27 50308--50346 19 2.1 19 100 0 78 41 10 10 38 1.73 51877--51936 21 2.8 21 73 14 59 53 6 13 26 1.64 54260--54354 35 2.9 31 75 18 93 29 8 3 58 1.43 54288--54315 13 2.2 13 100 0 56 32 7 0 60 1.24 54330--54364 12 2.9 12 100 0 70 25 8 0 65 1.21 54425--54467 12 3.7 11 80 20 52 48 2 4 44 1.36 54421--54490 16 4.9 16 78 20 68 47 4 2 45 1.37 54418--54469 23 2.3 23 93 0 86 48 1 3 46 1.31 54446--54493 16 3.0 16 93 0 78 45 4 2 47 1.33 54512--54555 15 2.9 15 83 13 54 22 2 2 72 1.07 54572--54612 17 2.5 16 84 4 55 60 2 7 29 1.36 62894--62920 13 2.1 13 100 0 54 14 22 0 62 1.31 63342--63383 21 2.0 21 95 0 75 45 7 9 38 1.64 63471--63504 18 1.9 18 94 5 61 50 0 0 50 1.00 63444--63503 29 2.1 29 81 12 70 50 0 1 48 1.11 63515--63545 13 2.4 13 94 0 53 54 0 9 35 1.33 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 63540--63589 22 2.2 23 92 3 84 58 4 8 30 1.45 63465--63580 49 2.3 51 78 14 143 54 1 6 37 1.35 63581--63634 27 2.0 27 81 0 63 59 7 11 22 1.56 63590--63641 27 1.9 27 88 0 77 55 5 13 25 1.60 63674--63807 16 9.0 15 72 24 72 38 2 0 58 1.19 63671--63781 27 3.9 27 75 13 107 39 2 0 56 1.19 63663--63794 43 3.1 43 79 12 141 37 3 1 56 1.26 63727--63772 17 3.0 15 79 14 58 39 2 2 56 1.24 63756--63802 11 4.5 11 76 17 55 38 2 0 59 1.09 63674--63807 62 2.2 59 84 10 175 38 2 0 58 1.19 63843--63882 20 2.0 20 100 0 80 35 5 5 55 1.44 63846--63889 20 2.2 20 87 0 61 38 2 6 52 1.41 64113--64185 36 1.9 38 89 10 114 52 1 8 38 1.40 64149--64191 15 2.8 16 93 6 72 55 2 4 37 1.33 64113--64205 24 3.9 25 75 18 83 54 1 7 36 1.36 68308--68333 13 2.0 13 100 0 52 23 15 15 46 1.83 70410--70434 12 2.1 12 100 0 50 44 0 8 48 1.32 70454--70499 16 2.9 17 81 12 62 47 4 2 45 1.34 70625--70654 14 2.1 14 100 0 60 36 6 0 56 1.26 71329--71367 14 2.8 14 96 0 69 43 0 15 41 1.46 73236--73277 18 2.3 18 95 0 75 54 4 4 35 1.42 73272--73334 16 4.0 16 74 12 67 53 0 17 28 1.44 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 73530--73589 16 3.8 16 75 4 50 55 1 1 41 1.20 73660--73803 18 8.3 16 67 17 74 56 1 2 38 1.22 73635--73736 53 2.0 50 84 9 134 55 2 0 40 1.21 73723--73805 10 7.8 11 69 16 59 60 1 3 34 1.22 73745--73820 34 2.3 34 90 4 120 65 0 5 28 1.14 73759--73813 18 3.2 18 74 10 69 67 0 5 27 1.12 73725--73805 20 4.3 20 71 17 75 60 1 3 34 1.22 78229--78271 21 2.0 21 86 0 59 30 4 0 65 1.13 82574--82605 14 2.4 14 94 5 57 37 0 18 43 1.51 83054--83078 12 2.1 12 100 0 50 40 8 0 52 1.31 ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Tables: 1 2