NC_052746.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_052746.1 Euphorbia lathyris chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 163738
Tables: 1
This is table 1 of 1 ( 101 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
37--76 22 1.9 20 85 10 53 32 15 5 47 1.66
561--592 16 2.0 16 100 0 64 12 6 12 68 1.37
4004--4029 13 2.0 13 100 0 52 46 7 15 30 1.74
5129--5169 13 3.1 13 93 6 73 29 14 0 56 1.39
5494--5523 15 1.9 16 93 6 53 63 6 6 23 1.43
9602--9630 13 2.1 14 93 6 51 41 0 0 58 0.98
9867--9906 20 2.0 20 85 0 53 42 15 15 27 1.86
9994--10037 14 3.0 15 83 6 63 34 6 6 52 1.55
11816--11873 16 3.3 17 83 11 73 34 8 6 50 1.60
15879--15926 15 3.1 15 82 5 51 18 4 2 75 1.07
16127--16161 16 2.2 16 89 0 52 42 5 20 31 1.75
17261--17292 16 2.0 16 93 0 55 28 15 0 56 1.40
19781--19811 15 2.1 15 100 0 62 38 6 19 35 1.77
29195--29242 12 4.1 12 81 13 64 54 0 2 43 1.12
29179--29242 16 3.8 16 78 15 67 53 0 1 45 1.10
29177--29232 28 2.0 29 89 3 87 53 0 0 46 1.00
29194--29240 23 2.0 23 88 12 69 55 0 2 42 1.12
29172--29255 28 3.0 28 79 8 82 54 0 2 42 1.13
29176--29252 16 4.7 15 72 19 64 54 0 1 44 1.08
29176--29240 23 2.6 22 81 18 67 53 0 1 44 1.09
30200--30231 16 2.0 16 100 0 64 43 0 12 43 1.42
30235--30283 17 3.1 16 88 8 73 48 14 4 32 1.62
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
30603--30628 13 2.0 13 100 0 52 38 7 0 53 1.30
30821--30848 14 2.0 14 100 0 56 50 14 21 14 1.78
31827--31853 13 2.1 13 100 0 54 14 0 22 62 1.31
32301--32348 11 4.7 11 75 17 50 56 2 6 35 1.36
32268--32354 30 2.9 30 77 11 83 55 2 8 34 1.42
32310--32346 19 2.0 19 94 5 67 62 0 5 32 1.18
32301--32361 30 2.0 30 83 3 77 62 1 6 29 1.30
33458--33496 16 2.4 17 86 4 53 43 0 0 56 0.99
34019--34065 24 2.0 24 100 0 94 38 19 0 42 1.51
34987--35036 16 3.2 15 88 8 73 42 14 2 42 1.56
35056--35087 15 2.1 15 100 0 64 46 0 6 46 1.27
39405--39443 19 2.1 19 95 0 69 53 7 5 33 1.51
39493--39525 16 2.1 16 94 0 57 54 9 0 36 1.32
39697--39727 15 2.1 15 100 0 62 25 0 0 74 0.82
39747--39784 13 2.7 14 88 12 60 44 2 5 47 1.39
39846--39881 18 2.0 18 100 0 72 33 5 0 61 1.19
39917--39973 13 4.3 13 93 6 89 56 0 14 29 1.39
39942--40017 31 2.5 31 82 4 91 52 0 10 36 1.36
40063--40102 21 1.9 21 89 0 62 67 7 2 22 1.28
40064--40110 21 2.2 21 84 0 58 68 6 4 21 1.30
40189--40226 19 2.0 19 94 0 67 44 0 10 44 1.38
40327--40362 17 2.1 17 89 0 54 36 5 0 58 1.22
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
40316--40367 17 3.3 15 74 12 50 34 3 0 61 1.14
46616--46672 29 1.9 30 85 3 80 35 5 0 59 1.20
46773--46822 20 2.3 21 83 13 66 64 10 0 26 1.25
47642--47667 11 2.4 11 100 0 52 26 15 7 50 1.71
50415--50464 15 3.4 15 70 13 50 52 10 6 32 1.59
52389--52425 15 2.4 15 95 4 65 45 0 13 40 1.43
55010--55054 22 2.0 22 95 0 81 28 11 0 60 1.31
55010--55060 22 2.5 20 87 9 68 29 11 0 58 1.33
55037--55090 27 2.0 28 88 3 83 37 7 3 51 1.48
55051--55119 20 3.5 19 78 9 68 33 8 2 55 1.46
56766--56800 18 1.9 18 88 0 52 48 8 0 42 1.33
64234--64298 20 3.2 20 95 4 114 60 0 4 35 1.18
64472--64518 22 2.1 22 84 7 60 51 0 2 46 1.13
64489--64528 16 2.3 18 87 12 66 45 2 0 52 1.14
64623--64683 18 3.1 18 71 17 50 65 0 8 26 1.20
66541--66582 21 2.0 21 95 0 75 14 7 33 45 1.72
67690--67745 15 3.7 15 73 7 60 25 10 0 64 1.26
68891--68928 19 2.0 19 100 0 76 21 5 10 63 1.46
70786--70814 14 2.1 14 100 0 58 55 0 0 44 0.99
71578--71637 20 3.0 20 82 4 77 33 6 5 55 1.48
74603--74640 20 1.9 20 94 0 67 42 5 10 42 1.62
75388--75441 28 2.0 25 89 10 81 29 14 7 48 1.71
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
75395--75441 14 3.4 14 97 2 87 27 14 6 51 1.67
75395--75450 28 2.0 27 86 10 78 28 16 5 50 1.67
76883--76965 25 3.5 24 74 21 86 60 0 4 34 1.18
77281--77309 13 2.3 13 94 5 51 68 0 0 31 0.89
83931--83968 19 2.0 19 100 0 76 36 5 10 47 1.61
87852--87876 11 2.3 11 100 0 50 36 0 0 64 0.94
89307--89331 13 1.9 13 100 0 50 40 8 20 32 1.81
90307--90343 18 2.1 18 100 0 74 37 0 21 40 1.54
90312--90352 18 2.3 18 86 0 55 41 2 17 39 1.62
91183--91229 23 2.0 23 100 0 94 42 12 4 40 1.63
91300--91331 16 2.0 16 93 0 55 21 21 0 56 1.43
96821--96910 21 4.1 21 80 5 81 12 23 8 55 1.64
99260--99352 18 5.2 18 97 2 154 31 5 29 34 1.80
99260--99339 9 8.9 9 72 5 72 31 5 28 35 1.79
101492--101516 12 2.1 12 100 0 50 56 8 8 28 1.57
107059--107096 15 2.5 15 87 8 51 10 2 0 86 0.66
107059--107096 14 2.6 15 87 4 51 10 2 0 86 0.66
107111--107136 12 2.2 12 100 0 52 7 7 0 84 0.77
107615--107653 18 2.1 19 95 4 71 23 10 5 61 1.48
107978--108011 16 2.1 16 94 0 59 52 0 14 32 1.42
112675--112720 21 2.2 21 100 0 92 23 13 19 43 1.86
117364--117390 13 2.1 13 100 0 54 22 14 0 62 1.31
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
118621--118664 17 2.5 17 92 3 70 59 0 0 40 0.98
129675--129699 11 2.3 11 100 0 50 60 0 16 24 1.36
138132--138158 13 2.1 13 100 0 54 62 0 14 22 1.31
142802--142847 21 2.2 21 100 0 92 43 19 13 23 1.86
147511--147544 16 2.1 16 94 0 59 32 14 0 52 1.42
147869--147907 18 2.1 19 95 4 71 61 5 10 23 1.48
148386--148411 12 2.2 12 100 0 52 84 0 7 7 0.77
148426--148463 14 2.5 15 87 8 51 86 0 2 10 0.66
148421--148463 19 2.3 19 88 8 61 86 0 4 9 0.71
154006--154030 12 2.1 12 100 0 50 28 8 8 56 1.57
156170--156262 18 5.2 18 97 2 154 34 29 5 31 1.80
156183--156262 9 8.9 9 72 5 72 35 28 5 31 1.79
158612--158701 21 4.1 21 80 5 81 55 8 23 12 1.64
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Tables: 1
The End!