NC_052868.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_052868.1 Cirsium setosum chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 152403
Tables: 1
This is table 1 of 1 ( 24 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
24635--24659 12 2.1 12 100 0 50 60 8 8 24 1.52
25041--25087 24 2.0 24 83 8 60 46 0 36 17 1.48
25330--25363 14 2.4 14 95 0 59 14 20 23 41 1.89
25916--25952 18 2.1 18 100 0 74 72 0 10 16 1.10
30429--30477 27 1.9 26 84 12 66 40 8 10 40 1.69
30678--30713 18 2.0 18 94 0 63 41 11 2 44 1.54
45488--45530 15 3.1 15 80 19 65 60 0 18 20 1.36
45488--45527 12 3.0 13 89 10 55 62 0 17 20 1.33
51477--51506 15 2.0 15 93 0 51 36 16 13 33 1.88
54231--54262 16 2.0 16 100 0 64 43 25 0 31 1.55
55948--55997 25 2.0 25 96 0 91 26 8 30 36 1.85
58538--58585 20 2.3 21 92 7 89 45 4 4 45 1.41
62652--62676 1 25.0 1 100 0 50 0 0 0 100 0.00
69655--69679 12 2.1 12 100 0 50 36 40 0 24 1.55
90627--90695 18 3.8 18 94 0 93 26 11 27 34 1.91
95889--95924 18 2.0 18 100 0 72 5 16 5 72 1.23
106508--106569 32 1.9 32 93 0 106 41 22 8 27 1.82
108853--108949 45 2.2 45 94 0 167 59 5 11 23 1.51
109334--109424 45 2.0 45 91 0 146 46 10 14 28 1.78
112128--112169 21 2.0 21 95 0 75 19 0 30 50 1.48
113515--113551 14 2.6 14 91 0 56 40 8 8 43 1.64
129220--129281 32 1.9 32 93 0 106 27 8 22 41 1.82
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
139865--139900 18 2.0 18 100 0 72 72 5 16 5 1.23
145094--145162 18 3.8 18 94 0 102 34 27 11 26 1.91
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Tables: 1
The End!