NC_053327.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_053327.1 Syzygium cumini chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 159996
Tables: 1
This is table 1 of 1 ( 36 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
269--329 27 2.3 27 82 0 77 29 9 0 60 1.29
286--342 27 2.1 27 83 3 69 33 7 0 59 1.24
4958--4992 15 2.3 15 90 0 52 68 2 11 17 1.31
13970--13994 13 1.9 13 100 0 50 32 12 0 56 1.36
15750--15794 13 3.4 14 80 17 51 26 0 0 73 0.84
15763--15866 52 2.0 51 81 7 122 30 2 0 65 1.14
35213--35269 10 5.7 10 81 4 62 73 3 14 8 1.20
35214--35258 20 2.2 20 100 0 90 71 4 15 8 1.28
35214--35282 20 3.6 19 88 11 81 72 2 13 11 1.23
35473--35499 13 2.1 13 100 0 54 33 7 14 44 1.73
39503--39536 16 2.1 16 88 0 50 32 2 11 52 1.53
45687--45712 13 2.0 13 100 0 52 38 0 0 61 0.96
46828--46853 13 2.0 13 100 0 52 23 7 7 61 1.49
46827--46856 13 2.4 12 89 10 51 20 6 6 66 1.38
48102--48142 14 2.9 14 85 7 55 68 14 2 14 1.32
48113--48143 15 2.1 15 93 0 53 70 12 0 16 1.16
50708--50763 1 56.0 1 100 0 112 100 0 0 0 0.00
51139--51167 15 1.9 15 100 0 58 13 10 6 68 1.37
54957--55002 22 2.1 21 84 4 56 43 8 6 41 1.61
54988--55017 15 2.0 15 100 0 60 53 6 6 33 1.53
67431--67487 26 2.2 26 100 0 114 43 19 7 29 1.77
76111--76152 21 2.0 20 95 4 75 40 7 4 47 1.52
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
79200--79232 15 2.2 15 100 0 66 24 18 6 51 1.68
86127--86179 20 2.7 19 82 8 61 26 3 7 62 1.39
87018--87058 15 2.7 15 100 0 82 12 4 0 82 0.81
87096--87122 13 2.1 13 100 0 54 18 37 0 44 1.50
87857--87909 25 2.1 25 100 0 106 26 16 11 45 1.82
93381--93446 21 3.2 21 82 2 80 12 22 7 57 1.60
95809--95867 9 6.6 9 78 0 64 33 6 32 27 1.83
95809--95871 18 3.5 18 100 0 126 33 6 31 28 1.82
113439--113470 16 2.0 16 93 0 55 37 15 9 37 1.80
131522--131576 26 2.1 26 100 0 110 36 10 7 45 1.67
135087--135118 16 2.0 16 93 0 55 37 9 15 37 1.80
152686--152748 18 3.5 18 100 0 126 28 31 6 33 1.82
152686--152747 9 6.9 9 79 0 70 29 32 4 33 1.78
155110--155199 21 4.1 21 81 4 81 55 10 22 12 1.66
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Tables: 1
The End!