NC_053355.1.fas.2.7.7.80.10.50.500.1.html Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: NC_053355.1 Abelmoschus moschatus chloroplast, complete genome Parameters: 2 7 7 80 10 50 500 Length: 163430 Tables: 1 2 This is table 1 of 2 ( 131 repeats found ) Click on indices to view alignment Table Explanation ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 135--175 21 1.9 22 90 5 66 46 0 7 46 1.30 5135--5202 3 22.7 3 82 8 68 32 0 0 67 0.91 5127--5168 19 2.2 19 91 4 66 28 0 0 71 0.86 5135--5202 28 2.4 28 90 7 102 32 0 0 67 0.91 5135--5211 28 2.7 28 84 9 86 29 1 0 68 0.97 6896--6925 9 3.3 9 90 0 51 26 0 0 73 0.84 6930--6957 13 2.2 13 100 0 56 32 0 7 60 1.24 6945--6982 19 2.0 19 100 0 76 36 0 15 47 1.46 7027--7060 17 2.0 17 94 0 59 58 8 5 26 1.51 7111--7144 17 2.0 17 94 0 59 47 20 11 20 1.81 7509--7533 12 2.1 12 100 0 50 60 0 16 24 1.36 8732--8771 17 2.3 17 95 4 71 40 0 12 47 1.41 8732--8765 9 3.9 9 92 7 61 41 0 11 47 1.40 8854--8894 21 2.0 21 90 0 64 36 12 7 43 1.70 10693--10734 19 2.2 19 100 0 84 30 9 9 50 1.67 14004--14047 15 3.0 15 83 3 54 25 0 0 75 0.81 14009--14035 12 2.2 12 100 0 54 22 0 0 77 0.76 14116--14141 12 2.2 12 100 0 52 42 7 15 34 1.75 14249--14290 21 2.0 21 95 0 75 69 7 4 19 1.31 28671--28759 11 8.1 11 80 18 89 61 2 1 34 1.15 28697--28763 2 35.5 2 74 16 54 59 0 1 38 1.06 28671--28734 19 3.0 21 84 15 80 64 3 0 32 1.10 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 28692--28763 19 3.8 19 82 13 87 61 0 1 37 1.05 30406--30437 13 2.4 14 85 15 50 56 6 12 25 1.59 30690--30728 17 2.3 17 95 0 69 25 7 10 56 1.59 33120--33159 14 3.0 14 89 7 57 70 12 5 12 1.33 33418--33459 21 2.0 21 100 0 84 57 9 0 33 1.31 33630--33708 2 41.0 2 73 7 65 54 1 2 41 1.22 34925--34955 13 2.4 13 100 0 62 54 12 16 16 1.71 38212--38250 19 2.1 19 100 0 78 33 10 5 51 1.58 38321--38381 30 2.0 30 100 0 122 37 9 32 19 1.85 39000--39127 3 42.3 3 69 23 74 64 0 3 31 1.11 38999--39127 27 5.0 27 72 16 114 65 0 3 31 1.11 39003--39125 23 5.0 23 72 17 79 65 0 4 30 1.11 39178--39202 13 1.9 13 100 0 50 60 0 0 40 0.97 39553--39587 9 4.0 9 85 7 54 31 11 11 45 1.76 44877--44907 15 2.1 15 100 0 62 19 12 0 67 1.22 45453--45495 14 3.1 14 93 6 79 37 6 0 55 1.27 45455--45495 13 3.1 13 93 6 73 36 7 0 56 1.27 45591--45625 17 2.1 17 94 0 61 54 0 5 40 1.24 47638--47687 2 26.5 2 86 11 70 54 0 0 46 1.00 49257--49317 20 3.0 20 100 0 122 29 0 14 55 1.40 49332--49388 16 3.6 16 78 0 60 82 0 3 14 0.80 49322--49381 30 1.9 30 83 6 75 81 3 1 13 0.89 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 49393--49440 20 2.4 21 89 6 73 58 2 0 39 1.10 49397--49517 24 5.0 24 70 13 79 60 2 2 34 1.23 49390--49459 33 2.3 29 85 9 86 58 2 1 37 1.22 49492--49521 14 2.1 14 100 0 60 66 0 0 33 0.92 50037--50079 12 3.6 12 93 0 68 41 13 2 41 1.57 50098--50127 15 2.0 15 100 0 60 60 0 6 33 1.23 54577--54614 19 2.0 19 100 0 76 52 0 10 36 1.36 54695--54727 13 2.4 14 95 5 59 24 9 0 66 1.20 54742--54908 13 13.3 13 70 16 86 38 1 0 59 1.08 54789--54925 39 3.2 41 76 19 102 42 0 1 56 1.08 54797--54888 37 2.6 36 89 6 134 41 0 0 58 0.98 54818--54875 7 9.0 7 76 14 54 41 0 0 58 0.98 54896--54943 20 2.4 20 100 0 96 45 0 8 45 1.33 54747--54907 2 86.5 2 66 14 76 39 1 0 58 1.09 55019--55062 22 2.0 22 100 0 88 40 27 9 22 1.84 58777--58808 11 2.9 11 95 0 55 15 18 9 56 1.66 59169--59199 16 1.9 16 100 0 62 32 12 3 51 1.56 59202--59248 19 2.7 18 87 12 71 42 4 0 53 1.20 59198--59439 5 50.8 5 69 22 114 38 2 0 59 1.09 59309--59368 6 8.6 7 74 18 54 33 0 0 66 0.92 59242--59336 19 5.0 19 70 18 65 34 3 0 62 1.11 59190--59426 21 11.3 21 66 25 78 38 2 0 59 1.11 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 59198--59530 13 26.1 13 69 19 127 38 1 0 60 1.06 59344--59438 42 2.2 42 94 3 163 44 0 0 55 0.99 59344--59455 42 2.7 42 88 5 129 45 0 0 54 0.99 59409--59479 17 4.0 17 78 8 79 46 0 0 53 1.00 59468--59535 27 2.8 23 74 20 66 30 0 0 69 0.89 59439--59516 27 2.8 28 84 11 90 37 0 0 62 0.95 59488--59525 12 3.2 12 88 7 60 28 0 0 71 0.87 59471--59543 16 4.3 18 73 18 59 31 0 0 68 0.90 64124--64157 17 2.0 17 88 0 50 38 2 11 47 1.55 65926--65952 13 2.1 13 100 0 54 62 0 7 29 1.22 68144--68196 26 2.0 26 96 0 97 35 11 20 32 1.88 68659--68698 19 2.1 19 100 0 80 37 10 22 30 1.87 68743--68796 2 29.0 2 78 14 62 53 0 0 46 1.00 68747--68797 17 2.8 19 80 14 63 52 0 0 47 1.00 71194--71237 19 2.3 18 77 11 52 34 2 0 63 1.07 72958--73024 29 2.3 29 87 7 93 35 0 0 64 0.94 72953--73023 32 2.2 32 83 13 94 36 0 0 63 0.95 73039--73082 20 2.5 16 75 25 52 45 4 0 50 1.22 73046--73085 20 2.0 20 100 0 80 45 5 0 50 1.23 73241--73279 21 1.9 21 94 5 71 30 25 10 33 1.89 76533--76570 16 2.5 15 84 12 51 28 18 0 52 1.45 76536--76568 16 2.1 16 94 0 57 27 21 0 51 1.48 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 82251--82276 13 2.0 13 100 0 52 53 0 15 30 1.42 89682--89716 17 2.1 17 100 0 70 54 5 0 40 1.24 90036--90071 14 2.5 15 86 13 58 47 0 0 52 1.00 90674--90704 14 2.2 14 100 0 62 29 12 6 51 1.65 94871--94939 21 3.3 21 87 2 95 11 24 8 55 1.64 97308--97379 18 4.2 18 85 5 96 30 9 25 34 1.88 97320--97378 9 6.6 9 78 0 55 30 11 27 30 1.92 100002--100044 20 2.0 20 91 8 68 51 0 4 44 1.22 105242--105352 17 7.1 17 74 20 98 20 11 4 63 1.45 105236--105332 44 2.2 44 98 0 185 19 12 4 63 1.44 105322--105349 14 2.0 14 100 0 56 14 14 0 71 1.15 105346--105431 6 15.2 6 80 16 94 36 1 15 47 1.53 105346--105431 11 7.6 12 78 15 94 36 1 15 47 1.53 105347--105430 27 3.0 28 84 7 107 36 1 15 46 1.54 113578--113639 32 1.9 32 96 0 115 38 22 9 29 1.86 114374--114412 17 2.3 17 100 0 78 25 10 0 64 1.25 114873--114907 17 2.1 17 94 0 61 45 11 20 22 1.82 116382--116425 21 2.1 21 83 8 54 70 4 4 20 1.23 117967--118008 20 2.0 20 82 13 50 54 21 2 21 1.56 119699--119738 20 2.0 20 100 0 80 20 5 15 60 1.53 122120--122152 17 1.9 17 100 0 66 24 12 0 63 1.28 124788--124851 28 2.3 28 97 0 119 54 4 14 26 1.59 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 131508--131537 15 2.0 15 100 0 60 33 6 40 20 1.78 134044--134073 15 2.0 15 100 0 60 40 13 13 33 1.83 136767--136801 17 2.1 17 94 0 61 22 20 11 45 1.82 137262--137300 17 2.3 17 100 0 78 64 0 10 25 1.25 138035--138096 32 1.9 32 96 0 115 29 9 22 38 1.86 146243--146328 6 15.2 6 80 13 94 47 15 1 36 1.53 146239--146328 11 8.1 11 78 14 80 47 15 1 35 1.53 146245--146322 27 2.8 28 86 3 104 47 14 1 37 1.52 146239--146327 38 2.5 35 85 10 110 47 15 1 35 1.53 146325--146352 14 2.0 14 100 0 56 71 0 14 14 1.15 ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Tables: 1 2