NC_053694.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_053694.1 Prunus verecunda chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 157917
Tables: 1
This is table 1 of 1 ( 47 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
119--154 18 2.0 18 100 0 72 27 11 11 50 1.72
4803--4828 13 2.0 13 100 0 52 46 7 0 46 1.31
8856--8886 15 2.1 15 93 0 53 41 6 16 35 1.74
9660--9719 26 2.4 26 86 5 79 55 3 0 41 1.16
13016--13049 17 2.0 17 100 0 68 41 11 17 29 1.85
13701--13744 17 2.6 18 82 10 56 56 0 4 38 1.20
20961--20990 15 2.0 15 93 0 51 33 13 23 30 1.93
27531--27558 13 2.2 13 100 0 56 39 0 21 39 1.54
28679--28714 17 2.1 17 94 0 63 30 5 2 61 1.33
37693--37720 9 3.1 9 100 0 56 42 0 14 42 1.45
48041--48081 13 3.2 12 86 10 55 68 0 2 29 1.03
51239--51270 16 2.0 16 100 0 64 18 12 12 56 1.67
52569--52602 11 3.2 11 91 4 52 41 0 11 47 1.40
52749--52805 7 8.0 7 80 3 51 50 7 1 40 1.40
52757--52906 14 10.7 14 69 15 62 58 2 4 36 1.29
52803--52850 22 2.2 22 100 0 96 66 0 8 25 1.19
52801--52857 22 2.5 23 88 11 91 66 0 7 26 1.17
52859--52915 2 31.5 2 73 19 54 52 0 3 43 1.18
52847--52910 9 7.3 9 74 13 62 54 1 1 42 1.19
58201--58250 25 2.0 25 100 0 100 40 16 16 28 1.89
60427--60452 13 2.0 13 100 0 52 53 7 15 23 1.67
65365--65391 13 2.1 13 100 0 54 37 7 29 25 1.83
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
67323--67357 17 2.1 17 94 0 61 37 5 8 48 1.58
71541--71591 21 2.4 21 100 0 102 49 0 13 37 1.43
71579--71615 15 2.5 15 95 0 65 56 0 5 37 1.22
76203--76238 18 2.0 18 100 0 72 38 5 11 44 1.63
90937--91004 21 3.2 21 82 0 82 11 22 7 58 1.57
93356--93407 18 2.9 18 94 0 95 32 7 28 30 1.85
96382--96432 17 3.1 16 78 16 59 52 7 0 39 1.30
96387--96424 16 2.5 16 87 8 53 50 5 0 44 1.24
100939--100964 12 2.2 12 100 0 52 7 7 0 84 0.77
109663--109726 31 2.1 31 93 0 110 40 25 7 26 1.82
115805--115850 19 2.3 20 78 17 60 60 0 0 39 0.97
116130--116210 23 3.6 23 83 3 101 48 0 2 49 1.14
116132--116201 13 5.9 13 75 21 73 50 0 2 47 1.16
116137--116200 22 2.8 23 92 2 112 51 0 3 45 1.17
116420--116456 18 2.1 17 95 5 65 56 5 2 35 1.36
116728--116752 12 2.1 12 100 0 50 68 0 8 24 1.16
121929--121955 12 2.2 12 100 0 54 40 0 14 44 1.46
130141--130174 15 2.3 15 94 0 59 0 20 5 73 1.04
134114--134177 31 2.1 31 93 0 110 26 7 25 40 1.82
142876--142901 12 2.2 12 100 0 52 84 0 7 7 0.77
147410--147460 17 3.1 18 75 16 56 41 0 7 50 1.31
147416--147460 16 2.8 16 83 6 56 44 0 6 48 1.29
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
147416--147470 15 3.6 16 78 9 62 47 0 5 47 1.25
150433--150484 18 2.9 18 94 0 95 30 28 7 32 1.85
152837--152925 21 4.1 21 81 5 81 56 7 23 12 1.62
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Tables: 1
The End!