NC_053701.1.fas.2.7.7.80.10.50.500.1.html

    Tandem Repeats Finder Program written by:

    Gary Benson
    Program in Bioinformatics
    Boston University
    Version 4.09

    Please cite:
    G. Benson,
    "Tandem repeats finder: a program to analyze DNA sequences"
    Nucleic Acid Research(1999)
    Vol. 27, No. 2, pp. 573-580.

    Sequence: NC_053701.1 Uncaria rhynchophylla chloroplast, complete genome
    Parameters: 2 7 7 80 10 50 500
    Length:  154870

    Tables:   1   

    This is table  1  of  1  ( 19 repeats found )

    Click on indices to view alignment

Table Explanation

  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
  Indices                            Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T    Entropy
                                     Size     Number   Size        Matches   Indels                                (0-2)

  5610--5639                         15       2.0      15          100       0         60      26   6    13   53   1.64

  9062--9111                         16       3.2      16          78        16        59      40   0    0    60   0.97

  13604--13644                       20       2.0      20          100       0         82      46   14   4    34   1.66

  32621--32655                       18       1.9      18          94        0         61      28   14   14   42   1.84

  32870--32897                       14       2.0      14          100       0         56      21   21   7    50   1.72

  49443--49486                       22       2.0      22          100       0         88      22   22   13   40   1.89

  51586--51621                       17       2.1      17          100       0         72      47   5    0    47   1.25

  58950--59024                       18       4.2      18          96        0         141     44   10   22   22   1.84

  60356--60386                       15       2.1      15          93        0         53      29   16   0    54   1.42

  69362--69402                       21       2.0      21          95        0         73      29   26   9    34   1.88

  76445--76475                       12       2.7      12          95        5         55      54   16   6    22   1.64

  90261--90315                       24       2.5      22          85        8         67      14   23   12   49   1.78

  90261--90343                       21       3.8      22          77        9         80      13   24   10   51   1.72

  92705--92744                       18       2.2      18          95        0         71      32   7    25   35   1.84

  111818--111853                     18       2.0      18          100       0         72      22   33   5    38   1.77

  125840--125886                     12       3.9      12          91        0         67      8    4    55   31   1.49

  147610--147649                     18       2.2      18          95        0         71      35   25   7    32   1.84

  150022--150075                     21       2.6      21          82        11        74      59   11   20   9    1.59

  150011--150093                     21       3.8      22          76        9         71      51   10   24   13   1.72
  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------

    Tables:   1   

The End!