NC_053703.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_053703.1 Prunus japonica chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 158080
Tables: 1
This is table 1 of 1 ( 53 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4828--4853 13 2.0 13 100 0 52 46 7 0 46 1.31
6941--6975 9 3.7 9 85 14 52 28 0 2 68 1.04
6941--6981 20 2.0 20 100 0 82 29 0 4 65 1.13
6966--7036 30 2.5 27 82 13 81 39 0 4 56 1.19
6943--7032 20 4.9 18 77 12 62 37 0 3 58 1.14
8511--8540 15 1.9 16 93 6 53 43 13 13 30 1.82
8556--8590 17 2.0 17 88 5 52 22 5 0 71 1.07
9795--9825 11 2.7 11 95 5 53 58 0 3 38 1.15
10049--10094 20 2.2 20 88 3 65 45 0 0 54 0.99
10057--10100 20 2.2 20 83 0 52 50 0 0 50 1.00
13414--13447 17 2.0 17 100 0 68 41 11 17 29 1.85
21379--21408 15 2.0 15 93 0 51 36 13 16 33 1.88
21384--21413 15 2.0 15 93 0 51 33 13 23 30 1.93
27948--27975 13 2.2 13 100 0 56 39 0 21 39 1.54
29090--29144 17 3.1 17 87 10 83 32 5 1 60 1.30
29097--29136 19 2.1 19 100 0 80 37 5 0 57 1.21
34206--34242 15 2.6 15 87 8 51 67 0 8 24 1.17
48451--48491 13 2.9 14 85 10 57 63 0 2 34 1.08
49057--49082 13 2.0 13 100 0 52 46 0 23 30 1.53
50480--50513 17 2.0 17 100 0 68 41 0 0 58 0.98
50483--50555 2 38.5 2 69 20 50 43 1 4 50 1.29
50483--50555 25 3.0 25 82 9 73 43 1 4 50 1.29
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
50498--50550 13 4.2 13 83 11 65 45 1 3 49 1.31
50481--50555 17 4.1 17 76 17 62 44 1 4 50 1.29
51663--51694 16 2.0 16 100 0 64 18 12 12 56 1.67
53163--53240 7 11.0 7 76 13 70 50 7 1 41 1.39
53164--53337 2 93.5 2 67 23 60 52 4 1 41 1.30
53167--53240 15 4.7 15 79 14 69 51 6 1 40 1.37
53172--53337 9 18.9 9 70 21 77 53 3 1 40 1.29
53259--53337 30 2.6 30 82 6 97 51 2 0 45 1.14
53327--53381 20 2.7 20 71 18 51 36 1 3 58 1.26
67698--67732 17 2.1 17 88 0 52 34 5 11 48 1.63
71939--71975 15 2.5 15 95 0 65 56 0 5 37 1.22
76546--76581 18 2.0 18 100 0 72 38 5 11 44 1.63
91255--91322 21 3.2 21 82 0 82 11 22 7 58 1.57
93674--93725 18 2.9 18 94 0 95 32 7 28 30 1.85
96700--96750 17 3.1 16 78 16 59 52 7 0 39 1.30
96705--96742 16 2.5 16 87 8 53 50 5 0 44 1.24
101243--101268 12 2.2 12 100 0 52 7 7 0 84 0.77
109965--110028 31 2.1 31 93 0 110 40 25 7 26 1.82
116343--116380 6 5.9 7 82 17 55 47 0 0 52 1.00
116343--116380 13 2.9 14 85 14 55 47 0 0 52 1.00
116593--116629 18 2.1 17 95 5 65 56 5 2 35 1.36
128605--128648 21 2.1 21 100 0 88 45 4 9 40 1.56
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
130330--130363 15 2.3 15 94 0 59 0 20 5 73 1.04
130335--130379 18 2.5 19 85 7 58 0 24 4 71 1.05
134323--134386 31 2.1 31 93 0 110 26 7 25 40 1.82
143083--143108 12 2.2 12 100 0 52 84 0 7 7 0.77
147603--147653 17 3.1 18 75 16 56 41 0 7 50 1.31
147609--147653 16 2.8 16 83 6 56 44 0 6 48 1.29
147609--147663 15 3.6 16 78 9 62 47 0 5 47 1.25
150626--150677 18 2.9 18 94 0 95 30 28 7 32 1.85
153030--153118 21 4.1 21 81 5 81 56 7 23 12 1.62
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Tables: 1
The End!