NC_053731.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_053731.1 Dianthus chinensis chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 149570
Tables: 1
This is table 1 of 1 ( 28 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
241--265 1 25.0 1 100 0 50 100 0 0 0 0.00
6133--6175 8 5.5 8 81 15 54 34 2 0 62 1.08
6133--6180 15 3.1 15 82 5 60 35 4 0 60 1.16
6141--6183 18 2.4 18 80 7 52 37 2 0 60 1.10
8237--8307 22 3.6 20 82 17 87 50 5 0 43 1.25
28620--28649 15 2.0 15 100 0 60 46 20 0 33 1.51
29873--29916 21 2.1 21 82 0 52 43 4 0 52 1.22
29885--29918 12 2.9 12 95 4 61 44 0 0 55 0.99
30096--30135 16 2.4 17 91 8 73 30 5 0 65 1.14
30140--30226 22 4.1 21 72 19 74 51 5 6 35 1.53
30130--30207 40 2.0 40 100 0 156 52 5 6 35 1.49
30190--30235 22 2.0 22 87 4 65 52 6 6 34 1.53
30830--30862 15 2.2 15 89 10 50 39 0 9 51 1.34
45298--45395 4 24.0 4 71 19 69 35 0 0 64 0.94
45298--45366 11 6.3 11 75 18 72 33 0 0 66 0.92
45305--45385 15 5.5 15 76 12 78 35 0 0 64 0.94
45359--45394 9 3.9 9 85 7 54 41 0 0 58 0.98
45299--45397 15 7.2 14 71 22 61 36 0 0 63 0.95
45303--45395 20 4.5 20 82 16 102 36 0 0 63 0.95
45720--45765 10 4.8 10 82 17 62 45 0 0 54 0.99
45719--45759 17 2.4 17 100 0 82 46 0 0 53 1.00
46132--46196 3 22.3 3 75 17 57 41 0 0 58 0.98
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
46136--46203 10 6.8 10 76 18 70 44 0 0 55 0.99
46132--46193 8 7.9 8 84 8 83 41 0 0 58 0.98
71294--71331 19 2.0 19 100 0 76 52 15 10 21 1.72
96045--96081 18 2.1 18 89 0 56 18 13 8 59 1.58
124325--124370 15 3.1 15 80 0 65 8 13 0 78 0.97
128246--128311 32 2.1 32 88 0 96 24 12 21 42 1.86
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Tables: 1
The End!