NC_053736.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_053736.1 Lysimachia christinae chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 154810
Tables: 1
This is table 1 of 1 ( 34 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3593--3617 12 2.1 12 100 0 50 24 32 8 36 1.84
6549--6574 12 2.2 12 100 0 52 34 7 7 50 1.60
6712--6736 12 2.1 12 100 0 50 28 0 8 64 1.22
12593--12633 12 3.6 12 80 12 59 41 14 12 31 1.83
12591--12635 22 2.0 22 100 0 90 40 13 13 33 1.83
29464--29491 14 2.0 14 100 0 56 28 7 0 64 1.20
45679--45720 22 2.0 21 81 13 50 57 9 4 28 1.51
46700--46751 2 29.5 2 75 24 55 53 0 0 46 1.00
46700--46751 9 6.1 9 81 18 67 53 0 0 46 1.00
46702--46751 19 2.7 20 82 17 63 54 0 0 46 1.00
46749--46774 13 2.0 13 100 0 52 61 0 23 15 1.33
49831--49861 14 2.2 14 100 0 62 6 6 6 80 1.02
59169--59199 15 2.1 15 100 0 62 48 6 0 45 1.28
62036--62062 14 1.9 14 100 0 54 40 14 7 37 1.74
68417--68457 21 2.0 21 95 0 73 29 26 9 34 1.88
70024--70067 15 2.9 15 100 0 88 25 13 6 54 1.63
82460--82512 27 1.9 28 88 3 81 32 5 1 60 1.31
87233--87274 21 2.0 21 100 0 84 28 14 19 38 1.90
89611--89665 24 2.5 22 85 8 67 14 23 12 49 1.78
89633--89700 21 3.2 21 77 8 75 11 22 8 57 1.61
92060--92130 18 3.9 18 86 0 97 33 8 28 29 1.86
99355--99391 16 2.3 16 95 0 65 43 27 16 13 1.85
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
100060--100097 18 2.1 18 90 0 58 21 13 5 60 1.52
100083--100108 11 2.4 11 100 0 52 26 7 15 50 1.71
108244--108313 36 2.1 34 86 10 99 41 22 8 27 1.83
112453--112494 20 2.0 21 86 13 61 54 21 0 23 1.44
126569--126610 21 2.0 20 82 13 50 11 7 2 78 1.04
131307--131376 36 2.1 34 86 10 99 27 8 22 41 1.83
139512--139537 11 2.4 11 100 0 52 50 15 7 26 1.71
139523--139560 18 2.1 18 90 0 58 60 5 13 21 1.52
140229--140265 16 2.3 16 95 0 65 13 16 27 43 1.85
147487--147560 18 4.1 18 87 0 94 31 27 8 33 1.86
149920--150009 21 4.1 22 75 8 76 54 10 23 12 1.67
152346--152387 21 2.0 21 100 0 84 38 19 14 28 1.90
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Tables: 1
The End!