NC_053767.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_053767.1 Cirsium japonicum chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 152602
Tables: 1
This is table 1 of 1 ( 28 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
24635--24659 12 2.1 12 100 0 50 60 8 8 24 1.52
25038--25084 24 2.0 24 83 8 60 46 0 36 17 1.48
29364--29399 18 2.0 18 94 0 63 61 0 8 30 1.26
30390--30438 27 1.9 26 84 12 66 40 8 10 40 1.69
30641--30676 18 2.0 18 94 0 63 41 11 2 44 1.54
45479--45509 15 2.1 15 100 0 62 58 0 19 22 1.40
51467--51496 15 2.0 15 93 0 51 36 16 13 33 1.88
53794--53842 24 2.0 24 100 0 98 57 8 8 26 1.56
54251--54282 16 2.0 16 100 0 64 43 25 0 31 1.55
55967--56016 25 2.0 25 96 0 91 26 8 30 36 1.85
58560--58607 20 2.3 21 92 7 89 45 4 4 45 1.41
65104--65128 12 2.1 12 100 0 50 40 8 16 36 1.77
67381--67421 21 2.0 21 95 0 73 31 24 9 34 1.88
89960--89986 9 3.0 9 100 0 54 11 11 44 33 1.75
90737--90817 18 4.5 18 92 0 99 27 11 28 33 1.91
106611--106672 32 1.9 32 93 0 106 41 22 8 27 1.82
108956--109052 45 2.2 45 96 0 176 60 5 10 23 1.49
109437--109527 45 2.0 45 91 0 146 46 10 14 28 1.78
111183--111214 15 2.1 15 100 0 64 62 6 0 31 1.20
112264--112305 21 2.0 21 95 0 75 19 0 30 50 1.48
112478--112524 24 2.0 24 100 0 94 46 0 40 12 1.42
112520--112592 30 2.4 30 86 0 92 36 4 23 35 1.74
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
113708--113744 14 2.6 14 95 0 65 43 5 8 43 1.57
116603--116641 19 2.1 19 100 0 78 5 20 0 74 1.01
129419--129480 32 1.9 32 93 0 106 27 8 22 41 1.82
145274--145342 18 3.8 18 94 0 102 34 27 11 26 1.91
145274--145369 36 2.7 36 78 0 102 33 28 10 28 1.90
146105--146131 9 3.0 9 100 0 54 33 44 11 11 1.75
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Tables: 1
The End!