NC_053783.1.fas.2.7.7.80.10.50.500.1.html

    Tandem Repeats Finder Program written by:

    Gary Benson
    Program in Bioinformatics
    Boston University
    Version 4.09

    Please cite:
    G. Benson,
    "Tandem repeats finder: a program to analyze DNA sequences"
    Nucleic Acid Research(1999)
    Vol. 27, No. 2, pp. 573-580.

    Sequence: NC_053783.1 Lithospermum erythrorhizon voucher KIOM201501011555 chloroplast, complete genome
    Parameters: 2 7 7 80 10 50 500
    Length:  149316

    Tables:   1   

    This is table  1  of  1  ( 20 repeats found )

    Click on indices to view alignment

Table Explanation

  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
  Indices                            Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T    Entropy
                                     Size     Number   Size        Matches   Indels                                (0-2)

  3534--3568                         14       2.6      14          90        4         54      22   14   11   51   1.74

  7609--7636                         13       2.2      13          100       0         56      39   7    7    46   1.59

  28600--28625                       13       2.0      13          100       0         52      38   23   0    38   1.55

  39420--39448                       15       1.9      15          100       0         58      17   27   34   20   1.95

  48828--48852                       12       2.1      12          100       0         50      24   16   32   28   1.96

  62363--62404                       16       2.6      17          88        11        70      66   0    4    28   1.12

  64867--64907                       21       2.0      21          95        0         73      31   26   9    31   1.89

  83169--83224                       20       2.8      20          97        0         103     46   12   10   30   1.76

  83531--83567                       18       2.1      18          94        0         65      54   5    5    35   1.47

  85838--85969                       21       6.1      22          84        5         128     12   22   10   54   1.68

  85860--85969                       21       5.2      21          87        4         141     11   21   10   56   1.64

  88316--88359                       18       2.4      18          88        0         70      31   25   15   27   1.96

  107870--107912                     20       2.1      20          83        12        52      55   20   2    20   1.54

  118897--118978                     40       2.0      40          92        0         137     36   6    12   45   1.67

  119900--119940                     16       2.5      17          80        11        50      9    9    7    73   1.26

  141369--141412                     18       2.4      18          88        0         70      27   15   25   31   1.96

  143777--143868                     21       4.4      21          94        2         132     56   11   20   10   1.65

  143759--143890                     21       6.1      22          84        5         128     54   10   22   12   1.68

  146161--146196                     18       2.1      18          94        5         65      36   5    5    52   1.48

  146504--146559                     20       2.8      20          97        0         103     30   10   12   46   1.76
  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------

    Tables:   1   

The End!