NC_053823.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_053823.1 Scrophularia ningpoensis voucher HSN12443 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 153175
Tables: 1
This is table 1 of 1 ( 37 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
96--132 17 2.2 17 100 0 74 32 10 5 51 1.60
9924--9958 17 2.1 17 100 0 70 28 11 5 54 1.59
28939--28974 18 2.0 18 100 0 72 38 0 22 38 1.54
37508--37561 27 2.0 27 100 0 108 44 11 18 25 1.83
45907--45937 15 2.1 15 100 0 62 45 12 6 35 1.68
46773--46805 13 2.5 13 95 0 57 75 0 18 6 1.00
46838--46884 2 25.0 2 81 12 55 44 0 0 55 0.99
46833--46859 13 2.1 13 100 0 54 37 0 0 62 0.95
46838--46885 20 2.5 20 90 10 73 45 0 0 54 0.99
47466--47517 17 3.1 17 100 0 104 36 0 5 57 1.23
47465--47511 8 5.6 8 80 9 58 38 0 4 57 1.18
60712--60756 21 2.1 21 100 0 90 31 22 15 31 1.95
63865--63896 16 2.0 16 100 0 64 25 18 0 56 1.42
63917--63951 17 2.1 17 100 0 70 45 5 20 28 1.73
67629--67663 17 2.0 18 88 5 54 2 25 0 71 1.00
68362--68402 21 2.0 21 90 0 64 31 26 7 34 1.84
74527--74564 19 2.0 19 100 0 76 52 15 10 21 1.72
74580--74617 18 2.1 18 100 0 76 39 10 10 39 1.74
79615--79661 24 2.0 24 86 0 67 29 29 14 25 1.95
86448--86487 20 2.0 20 90 0 62 47 5 20 27 1.70
89058--89112 24 2.5 22 85 8 67 14 23 12 49 1.78
89080--89147 21 3.2 21 77 8 75 11 22 8 57 1.61
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
91488--91565 18 4.3 18 90 0 129 30 8 25 34 1.87
91489--91552 9 7.1 9 70 0 56 31 6 26 35 1.81
99377--99424 10 4.5 11 85 14 66 33 0 16 50 1.46
111427--111465 20 2.0 20 85 10 53 56 23 0 20 1.42
112994--113028 17 2.1 17 100 0 70 45 5 22 25 1.74
113676--113702 13 2.1 13 100 0 54 33 29 0 37 1.58
119077--119112 18 2.0 18 100 0 72 16 22 11 50 1.77
123072--123099 13 2.2 13 100 0 56 28 7 14 50 1.69
126378--126412 14 2.5 14 90 0 61 0 17 5 77 0.96
137985--138052 17 4.1 16 78 17 59 48 19 1 30 1.58
138005--138046 10 4.0 10 82 17 50 50 19 0 30 1.48
138005--138046 22 2.0 21 90 9 68 50 19 0 30 1.48
145864--145941 18 4.3 18 90 0 129 34 25 8 30 1.87
148282--148371 21 4.1 22 75 8 76 54 10 23 12 1.67
150942--150981 20 2.0 20 90 0 62 27 20 5 47 1.70
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Tables: 1
The End!