NC_053834.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_053834.1 Ficus microcarpa chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 160735
Tables: 1
This is table 1 of 1 ( 46 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4868--4906 19 2.1 19 100 0 78 48 5 0 46 1.24
5134--5167 18 1.9 18 88 5 52 35 5 0 58 1.22
6957--7005 25 2.0 25 88 8 73 55 2 0 42 1.11
9043--9071 14 2.0 15 93 6 51 41 6 0 51 1.28
10811--10896 20 4.4 18 73 16 66 62 2 1 33 1.15
28762--28787 11 2.4 11 100 0 52 65 7 7 19 1.43
30105--30160 19 3.1 18 77 10 60 32 5 3 58 1.37
30944--30987 21 2.1 21 100 0 88 45 13 4 36 1.64
31226--31267 21 2.0 21 95 0 75 50 19 11 19 1.78
31360--31393 17 2.0 17 100 0 68 47 0 5 47 1.26
31953--31985 16 2.1 16 94 0 57 27 27 12 33 1.92
33672--33741 9 7.2 9 77 15 68 48 2 0 48 1.16
33685--33734 19 2.6 19 100 0 100 48 4 0 48 1.20
33681--33756 19 4.1 19 88 6 59 46 2 1 50 1.24
34052--34109 19 2.9 19 82 5 62 44 6 8 39 1.62
39185--39234 18 2.8 18 96 3 93 56 0 4 40 1.18
39180--39243 13 5.2 13 73 19 57 54 0 3 42 1.16
39166--39252 24 3.6 24 70 22 67 54 0 5 40 1.25
45489--45529 21 2.0 21 90 9 68 60 0 0 39 0.96
47402--47492 4 22.8 4 75 16 55 72 1 0 26 0.91
47405--47482 13 6.3 13 71 8 65 73 1 0 25 0.91
47433--47492 25 2.3 26 78 18 72 70 1 0 28 0.97
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
49545--49584 18 2.1 19 86 9 55 70 0 2 27 1.01
49544--49592 24 2.0 25 84 11 66 67 2 2 28 1.13
50207--50232 12 2.2 12 100 0 52 50 0 0 50 1.00
62676--62713 12 3.4 12 86 13 55 44 0 5 50 1.24
63104--63145 17 2.4 18 76 11 52 28 14 4 52 1.62
72460--72498 21 1.9 21 89 5 62 30 23 10 35 1.88
74864--74903 19 2.1 19 100 0 80 35 25 0 40 1.56
86806--86856 8 6.0 8 86 13 75 37 11 11 39 1.79
86808--86857 17 2.8 18 93 6 93 40 10 12 38 1.76
88112--88140 14 2.1 14 100 0 58 55 13 0 31 1.39
93738--93812 21 3.2 24 73 19 77 10 24 8 57 1.59
96165--96202 18 2.1 18 100 0 76 34 5 26 34 1.79
103559--103597 12 3.1 12 86 13 60 38 7 10 43 1.67
103557--103597 14 3.1 14 86 13 68 36 7 12 43 1.70
117171--117199 14 2.1 14 100 0 58 65 6 6 20 1.40
117749--117791 21 2.0 21 86 8 61 32 2 2 62 1.20
118662--118705 22 1.9 24 90 9 74 54 6 0 38 1.27
119530--119564 18 2.0 17 88 5 52 57 0 5 37 1.23
123813--123854 19 2.2 19 91 0 66 30 23 2 42 1.67
127461--127493 15 2.1 15 94 5 57 45 0 0 54 0.99
145939--145979 14 3.1 14 86 13 68 43 12 7 36 1.70
145939--145977 12 3.1 12 92 7 60 43 10 7 38 1.67
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
153337--153374 18 2.1 18 100 0 76 34 26 5 34 1.79
155748--155802 21 2.6 21 97 0 92 58 9 21 10 1.60
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Tables: 1
The End!