NC_053840.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_053840.1 Gentiana manshurica chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 149185
Tables: 1
This is table 1 of 1 ( 26 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
246--280 17 2.1 17 94 0 61 45 0 8 45 1.34
307--351 21 2.1 21 100 0 90 48 17 4 28 1.66
7493--7517 12 2.1 12 100 0 50 52 0 24 24 1.48
13911--13938 14 2.0 14 100 0 56 35 14 7 42 1.73
25683--25707 12 2.1 12 100 0 50 32 0 32 36 1.58
29817--29864 24 2.0 24 91 0 78 47 2 14 35 1.56
29879--29907 14 2.1 14 100 0 58 24 41 0 34 1.55
30116--30140 13 1.9 13 100 0 50 32 20 8 40 1.81
34985--35013 13 2.2 13 100 0 58 55 0 6 37 1.27
46511--46540 15 2.0 15 100 0 60 20 13 6 60 1.55
55109--55143 16 2.3 15 90 5 52 28 2 11 57 1.48
55449--55476 14 2.0 14 100 0 56 21 7 0 71 1.09
57112--57141 15 1.9 16 93 6 53 40 6 0 53 1.27
59634--59676 14 2.9 14 89 6 59 41 18 9 30 1.82
62782--62811 15 2.0 15 93 0 51 46 10 33 10 1.71
63631--63661 15 2.0 16 93 6 55 45 0 16 38 1.47
65245--65274 15 2.0 15 100 0 60 13 26 6 53 1.64
65751--65791 21 2.0 21 85 0 55 36 24 7 31 1.83
68222--68250 13 2.2 13 100 0 58 27 17 0 55 1.42
70166--70193 14 2.0 14 100 0 56 35 14 7 42 1.73
96918--96953 12 3.0 12 100 0 72 41 16 25 16 1.89
104030--104092 31 2.0 31 90 0 99 42 22 9 25 1.83
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
122852--122919 24 3.1 24 72 24 76 25 5 8 60 1.49
122859--122907 18 2.7 18 90 0 62 24 6 8 61 1.47
126441--126503 31 2.0 31 90 0 99 25 9 22 42 1.83
133580--133615 12 3.0 12 100 0 72 16 25 16 41 1.89
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Tables: 1
The End!