NC_053938.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_053938.1 Changium smyrnioides chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 155221
Tables: 1
This is table 1 of 1 ( 27 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
20731--20829 49 2.0 49 88 0 144 28 18 21 32 1.96
29260--29306 11 4.3 11 100 0 94 25 27 0 46 1.53
47274--47307 17 2.1 16 88 5 50 38 0 11 50 1.39
52948--52998 16 3.2 16 100 0 102 23 0 5 70 1.09
62375--62401 14 1.9 14 100 0 54 40 14 7 37 1.74
63973--64023 9 6.0 9 80 13 63 49 0 0 50 1.00
63974--64066 33 2.7 34 81 15 95 44 0 0 55 0.99
64016--64049 13 2.5 13 95 4 59 41 0 0 58 0.98
63974--64081 35 3.4 30 75 24 82 45 0 0 54 0.99
68431--68480 24 2.1 24 92 0 82 48 8 4 40 1.51
68571--68611 21 2.0 21 95 0 73 29 26 9 34 1.88
74849--74885 19 1.9 19 100 0 74 54 16 10 18 1.71
89012--89079 21 3.2 21 77 8 75 11 22 8 57 1.61
90187--90230 15 2.9 15 96 0 79 25 34 15 25 1.95
91456--91539 18 4.7 18 96 0 141 28 5 29 35 1.81
91456--91538 9 9.2 9 71 0 67 28 6 30 34 1.81
107593--107658 32 2.1 32 97 0 123 40 24 9 25 1.84
113906--113943 17 2.2 17 100 0 76 73 5 0 21 1.02
114266--114306 22 2.0 20 85 9 55 68 7 9 14 1.39
115011--115059 14 3.5 14 100 0 98 63 0 6 30 1.19
119108--119132 12 2.1 12 100 0 50 48 0 16 36 1.46
132355--132420 32 2.1 32 97 0 123 25 9 24 40 1.84
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
148474--148557 18 4.7 18 96 0 141 35 29 5 28 1.81
148480--148557 9 8.7 9 72 0 66 35 30 5 28 1.79
149783--149826 15 2.9 15 96 0 79 25 15 34 25 1.95
150952--151005 21 2.6 21 82 11 74 59 11 20 9 1.59
150935--151004 21 3.4 19 72 16 59 57 8 22 11 1.61
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Tables: 1
The End!