NC_054329.1.fas.2.7.7.80.10.50.500.1.html

    Tandem Repeats Finder Program written by:

    Gary Benson
    Program in Bioinformatics
    Boston University
    Version 4.09

    Please cite:
    G. Benson,
    "Tandem repeats finder: a program to analyze DNA sequences"
    Nucleic Acid Research(1999)
    Vol. 27, No. 2, pp. 573-580.

    Sequence: NC_054329.1 Coptis japonica chloroplast, complete genome
    Parameters: 2 7 7 80 10 50 500
    Length:  154985

    Tables:   1   

    This is table  1  of  1  ( 18 repeats found )

    Click on indices to view alignment

Table Explanation

  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
  Indices                            Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T    Entropy
                                     Size     Number   Size        Matches   Indels                                (0-2)

  6--62                              11       5.3      11          81        10        73      52   0    0    47   1.00

  1--62                              21       2.9      21          97        2         115     51   0    0    48   1.00

  1--57                              10       5.5      10          83        8         78      50   0    0    49   1.00

  4702--4743                         19       2.2      19          87        8         59      71   0    16   11   1.14

  5753--5787                         18       1.9      18          88        0         52      17   5    25   51   1.67

  26918--26964                       21       2.2      21          92        0         76      34   8    23   34   1.85

  32208--32250                       17       2.6      17          79        17        54      44   0    6    48   1.29

  66609--66645                       17       2.1      18          90        5         58      32   10   5    51   1.60

  79696--79742                       24       2.0      24          91        0         76      21   34   19   25   1.96

  91748--91826                       18       4.6      18          93        4         128     32   6    25   35   1.81

  91760--91818                       9        6.6      9           78        0         64      33   6    27   32   1.83

  111283--111326                     12       3.8      12          82        11        65      59   2    6    31   1.36

  111281--111325                     22       2.0      22          95        0         81      57   2    8    31   1.41

  119963--119997                     18       1.9      18          88        0         52      45   0    0    54   0.99

  127267--127307                     18       2.3      18          100       0         82      19   12   0    68   1.21

  128327--128355                     12       2.5      12          94        5         51      24   13   27   34   1.93

  148227--148286                     9        6.7      9           76        0         66      33   26   6    33   1.83

  148220--148298                     18       4.6      18          93        4         128     35   25   6    32   1.81
  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------

    Tables:   1   

The End!