NC_054331.1.fas.2.7.7.80.10.50.500.1.html

    Tandem Repeats Finder Program written by:

    Gary Benson
    Program in Bioinformatics
    Boston University
    Version 4.09

    Please cite:
    G. Benson,
    "Tandem repeats finder: a program to analyze DNA sequences"
    Nucleic Acid Research(1999)
    Vol. 27, No. 2, pp. 573-580.

    Sequence: NC_054331.1 Coptis teeta chloroplast, complete genome
    Parameters: 2 7 7 80 10 50 500
    Length:  154156

    Tables:   1   

    This is table  1  of  1  ( 8 repeats found )

    Click on indices to view alignment

Table Explanation

  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
  Indices                            Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T    Entropy
                                     Size     Number   Size        Matches   Indels                                (0-2)

  12225--12254                       15       2.0      15          100       0         60      40   13   20   26   1.89

  26762--26808                       21       2.2      21          92        0         76      34   8    23   34   1.85

  31844--31906                       17       3.2      20          72        21        60      42   0    6    50   1.27

  57663--57696                       17       2.0      17          94        0         59      55   0    5    38   1.24

  78884--78930                       24       2.0      24          91        0         76      21   34   19   25   1.96

  90927--90987                       18       3.6      18          91        6         92      32   6    24   36   1.81

  113098--113134                     18       2.1      18          100       0         74      27   10   5    56   1.55

  147410--147470                     18       3.6      18          91        6         92      36   24   6    32   1.81
  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------

    Tables:   1   

The End!