NC_054336.1.fas.2.7.7.80.10.50.500.1.html Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: NC_054336.1 Homalomena occulta chloroplast, complete genome Parameters: 2 7 7 80 10 50 500 Length: 165398 Tables: 1 2 This is table 1 of 2 ( 200 repeats found ) Click on indices to view alignment Table Explanation ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 132--163 16 2.0 16 93 0 55 21 6 6 65 1.38 168--290 4 30.8 4 73 16 60 34 0 0 65 0.93 165--334 21 7.8 21 75 18 127 36 0 0 63 0.95 231--315 2 45.5 2 70 13 56 42 0 0 57 0.98 229--308 17 4.4 17 76 13 70 43 0 0 56 0.99 351--435 35 2.2 38 82 17 106 38 2 3 55 1.30 387--434 17 2.7 18 93 3 80 37 4 4 54 1.39 431--471 16 2.7 15 85 7 55 26 7 2 63 1.33 437--471 16 2.2 16 94 0 61 25 5 2 65 1.28 588--624 16 2.3 16 90 0 56 10 0 8 81 0.89 642--666 13 1.9 13 100 0 50 32 0 12 56 1.36 5945--5977 16 2.1 16 94 0 57 15 0 0 84 0.61 5975--6028 18 3.1 18 86 5 76 40 0 0 59 0.98 5977--6021 13 3.2 14 82 17 58 42 0 0 57 0.98 5997--6053 16 3.4 16 85 9 62 50 0 0 49 1.00 6025--6065 16 2.6 16 100 0 82 51 0 0 48 1.00 5981--6057 31 2.7 29 86 8 95 48 0 0 51 1.00 6154--6254 9 11.6 8 73 22 64 69 1 1 26 1.10 6156--6250 28 3.4 28 73 17 65 68 2 2 27 1.12 6154--6210 18 3.2 18 83 16 75 68 0 0 31 0.90 6158--6254 15 6.6 15 72 20 55 69 2 2 26 1.11 7937--7966 15 2.0 15 100 0 60 53 0 20 26 1.46 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 8141--8170 15 2.0 15 100 0 60 66 13 13 6 1.43 10128--10154 14 1.9 14 100 0 54 40 7 0 51 1.30 10159--10218 29 2.0 30 83 3 77 43 3 3 50 1.35 10205--10259 15 3.4 15 85 14 74 45 0 0 54 0.99 10214--10264 9 5.9 9 82 17 72 47 0 0 52 1.00 10199--10277 26 3.0 25 75 17 63 49 0 0 50 1.00 10211--10266 19 3.2 18 88 11 82 50 0 0 50 1.00 10231--10375 5 29.8 5 66 22 51 60 0 1 37 1.10 10262--10354 3 31.0 3 71 23 63 67 1 2 29 1.09 10346--10426 21 4.1 19 72 20 58 49 0 0 50 1.00 10736--10788 19 2.6 20 91 8 81 37 3 13 45 1.61 11162--11196 15 2.4 14 85 4 52 37 14 0 48 1.44 11199--11278 16 5.1 16 77 16 71 53 0 1 45 1.08 11258--11302 16 2.7 16 93 6 72 55 0 6 37 1.26 11312--11383 22 3.5 20 76 14 74 69 1 0 29 0.97 11308--11394 5 16.8 5 73 12 52 68 1 0 29 0.96 11374--11421 14 3.4 14 81 15 55 56 2 0 41 1.11 11430--11464 14 2.6 14 90 4 54 57 5 5 31 1.46 12784--12816 16 2.1 16 100 0 66 30 21 0 48 1.50 15422--15458 16 2.2 17 90 4 58 16 0 2 81 0.81 15891--15923 2 17.0 2 87 6 50 48 0 0 51 1.00 15921--15955 13 2.6 13 90 4 52 82 0 0 17 0.66 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 18586--18626 18 2.2 19 95 4 75 34 9 4 51 1.56 30870--30903 17 2.0 17 100 0 68 41 0 17 41 1.50 30947--31094 55 2.6 54 76 14 149 34 0 0 64 1.04 30974--31095 13 9.5 14 71 21 74 32 0 0 66 0.98 30967--31091 30 4.2 29 77 18 98 33 0 0 65 0.98 30949--31113 30 5.3 29 70 18 68 33 0 2 63 1.12 31007--31096 15 5.9 15 71 20 55 33 1 0 65 1.00 30985--31095 28 3.9 28 74 22 88 32 0 0 66 0.98 31071--31133 31 1.9 34 84 9 87 34 1 7 55 1.39 35214--35290 19 4.1 20 73 18 67 42 0 0 57 0.99 35217--35298 23 3.2 26 80 19 93 41 0 1 57 1.06 35222--35269 14 3.3 15 80 14 64 43 0 0 56 0.99 35243--35296 23 2.3 23 96 3 99 38 0 1 59 1.08 35221--35290 15 5.4 13 85 14 92 41 0 0 58 0.98 35672--35745 17 4.6 17 70 13 57 35 6 1 56 1.34 35859--35938 18 4.2 20 73 20 75 52 0 0 47 1.00 35859--35931 11 6.5 11 80 15 78 50 0 0 49 1.00 35859--35940 16 5.2 16 76 18 75 52 0 0 47 1.00 40317--40346 14 2.1 14 93 0 51 23 16 13 46 1.82 40837--40943 13 7.6 14 73 13 53 26 1 0 71 0.96 40868--40942 29 2.4 32 78 14 86 30 0 0 69 0.89 40855--40933 14 5.4 14 72 8 59 29 1 0 69 0.96 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 40838--40910 20 3.7 20 78 12 80 21 2 0 75 0.93 40860--41084 73 3.2 68 72 15 179 34 0 0 64 1.00 40981--41057 20 4.0 20 77 17 90 41 0 0 58 0.98 40987--41057 18 3.7 18 76 16 72 42 0 0 57 0.98 40992--41086 16 5.7 15 71 23 50 36 0 1 62 1.03 40952--41010 29 2.0 30 87 9 86 40 0 1 57 1.09 40989--41061 38 1.9 37 91 8 121 42 0 0 57 0.98 41043--41083 9 4.7 9 82 14 50 34 0 2 63 1.08 41049--41096 13 3.7 13 81 13 55 29 0 4 66 1.10 41158--41184 14 1.9 14 100 0 54 22 7 0 70 1.12 49968--49999 16 2.0 16 100 0 64 25 31 0 43 1.55 51468--51510 20 2.1 21 80 20 56 39 9 0 51 1.34 51471--51520 18 2.7 20 85 14 63 44 8 0 48 1.32 51492--51540 17 2.8 17 87 3 62 55 4 0 40 1.19 51519--51577 32 1.9 29 83 16 75 61 0 6 32 1.22 51552--51627 13 5.9 12 75 21 57 68 0 3 27 1.07 52118--52147 11 2.7 11 94 0 51 46 0 0 53 1.00 52118--52157 14 2.8 15 88 11 66 47 0 0 52 1.00 52336--52371 18 2.0 18 94 0 63 33 8 0 58 1.28 52367--52444 15 5.1 15 76 17 54 42 0 6 51 1.27 52396--52421 13 2.0 13 100 0 52 46 0 7 46 1.31 52418--52447 15 2.0 15 100 0 60 46 0 6 46 1.29 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 52425--52468 18 2.5 18 88 3 63 43 2 4 50 1.35 52473--52522 16 3.1 16 91 2 73 42 0 0 58 0.98 52481--52571 5 17.8 5 69 15 53 36 2 1 60 1.16 52492--52586 20 4.5 21 73 16 65 36 2 2 58 1.21 53497--53530 13 2.8 12 86 8 50 26 0 0 73 0.83 53499--53524 13 2.0 13 100 0 52 23 0 0 76 0.78 54597--54659 16 4.3 15 83 16 71 53 0 4 41 1.22 54603--54676 38 1.9 38 81 10 89 52 0 4 43 1.20 54564--54676 53 2.1 54 83 8 142 51 0 5 42 1.30 54599--54674 16 4.5 17 72 23 54 53 0 5 40 1.23 54661--54721 17 3.4 18 75 13 63 67 1 1 29 1.10 54636--54755 34 3.5 33 76 15 102 62 0 1 35 1.11 54685--54738 16 3.3 17 78 14 60 68 0 0 31 0.90 54746--54789 14 2.9 15 80 13 54 77 2 4 15 1.04 63877--63907 16 1.9 16 93 0 53 51 12 0 35 1.40 63883--63916 16 2.1 16 88 0 50 55 11 0 32 1.36 64461--64489 15 1.9 15 100 0 58 31 6 13 48 1.69 66020--66060 17 2.3 19 91 8 68 29 0 7 63 1.21 66072--66129 25 2.4 24 81 13 66 32 1 1 63 1.14 66093--66132 17 2.3 17 86 4 53 30 2 0 67 1.04 66178--66222 14 3.1 14 84 9 56 64 0 4 31 1.13 66234--66270 16 2.3 16 100 0 74 51 0 5 43 1.24 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 66232--66312 36 2.2 36 83 12 96 46 1 9 41 1.45 66434--66497 3 22.7 3 77 15 57 68 4 0 26 1.09 66556--66580 12 2.1 12 100 0 50 40 40 8 12 1.72 66661--66692 17 1.9 16 93 6 55 68 3 18 9 1.30 66782--66840 17 3.4 18 90 9 97 40 5 0 54 1.23 66782--66840 6 10.3 6 71 10 52 40 5 0 54 1.23 66781--66853 9 8.1 9 74 6 58 39 4 0 56 1.19 71601--71629 13 2.2 13 100 0 58 55 0 0 44 0.99 71606--71654 13 3.6 13 79 15 55 48 0 0 51 1.00 71606--71656 15 3.7 15 80 15 56 47 0 0 52 1.00 ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Tables: 1 2