NC_056093.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_056093.1 Iris tectorum chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 153253
Tables: 1
This is table 1 of 1 ( 27 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
27424--27456 13 2.6 13 90 4 50 39 9 3 48 1.50
28434--28458 12 2.1 12 100 0 50 36 8 24 32 1.84
29668--29700 16 2.1 17 88 11 52 6 15 0 78 0.93
36122--36148 13 2.1 13 100 0 54 14 22 0 62 1.31
56380--56408 14 2.1 14 100 0 58 65 6 13 13 1.45
68466--68512 25 1.9 24 86 4 67 48 17 4 29 1.65
68509--68540 15 2.1 15 100 0 64 40 0 25 34 1.56
70264--70318 28 1.9 28 85 3 74 29 16 10 43 1.82
78354--78399 24 1.9 24 95 0 83 26 32 13 28 1.93
80824--80935 55 2.0 55 100 0 224 35 7 14 42 1.73
85454--85505 23 2.3 23 90 9 81 46 5 23 25 1.74
88082--88192 21 5.1 21 94 3 168 13 27 9 48 1.74
90534--90580 24 2.0 24 91 0 76 34 6 25 34 1.81
90529--90589 18 3.4 18 80 17 65 34 4 26 34 1.78
90530--90587 9 6.8 9 71 11 50 32 5 25 36 1.78
110374--110412 20 2.0 20 85 10 53 56 23 0 20 1.42
122449--122503 9 5.8 9 85 10 74 43 0 0 56 0.99
122449--122504 20 2.9 19 82 12 78 42 0 0 57 0.99
125458--125512 24 2.3 24 96 3 103 27 14 3 54 1.57
126324--126348 3 8.3 3 100 0 50 0 36 0 64 0.94
126451--126489 18 2.2 18 90 0 60 2 38 0 58 1.12
126464--126493 15 2.0 15 93 0 51 0 43 0 56 0.99
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
145498--145558 18 3.4 18 78 19 65 34 26 4 34 1.78
145507--145553 24 2.0 24 91 0 76 34 25 6 34 1.81
145500--145558 9 7.0 8 73 22 50 35 25 5 33 1.78
147895--148005 21 5.1 21 94 3 168 48 9 27 13 1.74
150582--150633 23 2.3 23 90 9 81 25 23 5 46 1.74
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Tables: 1
The End!