NC_056142.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_056142.1 Verbena officinalis chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 153491
Tables: 1
This is table 1 of 1 ( 51 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
645--729 18 4.7 18 100 0 170 5 44 0 49 1.26
3102--3162 31 2.0 31 93 0 104 27 9 21 40 1.85
10829--10863 17 2.0 18 94 5 63 48 22 0 28 1.51
10856--10901 23 2.0 23 91 0 74 56 10 13 19 1.66
17028--17058 15 2.1 15 93 0 53 41 0 22 35 1.54
17376--17404 15 1.9 15 100 0 58 13 48 3 34 1.60
17425--17496 18 4.2 18 69 16 62 26 31 5 36 1.80
20439--20495 21 2.7 21 100 0 114 28 26 22 22 1.99
21500--21588 21 4.2 21 78 5 90 58 7 21 12 1.59
21500--21580 42 1.9 42 85 5 110 58 7 20 13 1.60
21633--21663 15 2.1 15 100 0 62 48 25 6 19 1.72
23463--23511 15 3.5 15 68 21 52 24 4 12 59 1.50
23457--23552 26 3.7 26 95 0 165 22 8 11 57 1.60
30428--30457 15 2.0 15 100 0 60 33 6 33 26 1.83
34836--34876 21 1.9 22 85 5 57 34 12 9 43 1.75
39263--39360 21 4.4 21 78 16 90 41 1 37 19 1.58
41258--41319 21 3.0 21 97 0 115 33 9 27 29 1.88
49247--49291 21 2.1 21 100 0 90 31 15 22 31 1.95
50048--50089 21 2.0 21 95 0 75 35 14 21 28 1.92
50747--50793 18 2.6 18 86 0 67 2 48 0 48 1.13
50763--50826 24 2.7 24 82 0 83 3 46 3 46 1.34
50763--50878 48 2.4 50 77 13 127 2 43 3 50 1.33
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
50764--50842 12 6.7 12 72 17 58 3 44 2 49 1.34
50920--50958 18 2.1 19 85 4 53 2 46 0 51 1.14
51303--51420 27 4.4 27 85 2 157 16 19 19 44 1.86
51303--51418 54 2.1 54 93 3 198 15 19 19 44 1.86
51395--51433 18 2.2 18 100 0 78 15 20 20 43 1.88
51528--51582 27 2.0 27 96 0 101 40 20 0 40 1.52
78116--78154 13 2.9 14 84 7 53 28 5 12 53 1.60
80037--80074 19 2.0 19 94 0 67 26 18 7 47 1.76
93994--94032 18 2.1 19 85 4 53 38 10 12 38 1.78
103664--103706 21 2.0 21 86 8 61 39 11 18 30 1.86
112583--112678 26 3.7 26 95 0 165 57 11 8 22 1.60
112624--112672 15 3.5 15 68 21 52 59 12 4 24 1.50
114472--114502 15 2.1 15 100 0 62 19 6 25 48 1.72
114547--114635 21 4.2 21 78 5 90 12 21 7 58 1.59
114555--114635 42 1.9 42 85 5 110 13 20 7 58 1.60
115640--115696 21 2.7 21 100 0 114 22 22 26 28 1.99
118646--118714 18 4.1 17 68 19 54 36 5 31 26 1.80
118731--118759 15 1.9 15 100 0 58 34 3 48 13 1.60
119077--119107 15 2.1 15 93 0 53 35 22 0 41 1.54
125234--125279 23 2.0 23 91 0 74 19 13 10 56 1.66
125272--125306 17 2.0 18 94 5 63 28 0 22 48 1.51
132973--133033 31 2.0 31 93 0 104 40 21 9 27 1.85
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
135412--135479 9 7.6 9 69 0 55 52 0 42 4 1.21
135406--135490 18 4.7 18 100 0 170 49 0 44 5 1.26
137803--137841 20 2.0 20 85 10 53 56 23 0 20 1.42
150233--150351 54 2.2 54 87 3 168 8 27 10 52 1.65
150228--150436 18 11.6 18 80 0 148 6 24 10 58 1.54
150256--150389 54 2.5 54 88 2 189 7 29 9 53 1.61
150926--150974 24 2.0 24 100 0 98 32 20 8 38 1.82
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Tables: 1
The End!