NC_056200.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_056200.1 Ilex rotunda chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 157743
Tables: 1
This is table 1 of 1 ( 26 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
21715--21744 15 2.0 15 93 0 51 33 13 23 30 1.93
39110--39134 12 2.1 12 100 0 50 56 0 20 24 1.43
46571--46603 17 1.9 17 93 0 57 45 9 18 27 1.79
47885--47956 31 2.3 31 95 0 126 25 8 0 66 1.19
48563--48592 14 2.1 14 93 0 51 33 13 0 53 1.40
52870--52924 27 2.0 27 92 0 92 58 7 10 23 1.57
57438--57462 13 1.9 13 100 0 50 32 4 24 40 1.73
59970--60005 18 2.0 18 100 0 72 27 11 22 38 1.88
62121--62145 12 2.1 12 100 0 50 60 24 8 8 1.52
70782--70821 21 1.9 21 94 0 71 30 22 10 37 1.87
82245--82292 24 2.0 24 87 0 69 29 31 14 25 1.95
82388--82414 13 2.1 13 100 0 54 22 7 7 62 1.46
91835--91889 24 2.5 22 85 8 67 14 23 12 49 1.78
91857--91924 21 3.2 21 77 8 75 11 22 8 57 1.61
94274--94363 18 5.2 18 92 4 132 32 7 24 35 1.84
94286--94362 9 8.6 9 69 0 55 32 9 25 32 1.87
102251--102309 28 2.1 29 87 3 84 28 5 8 57 1.50
102256--102316 16 3.8 16 81 14 54 31 3 11 54 1.52
110444--110541 32 3.1 32 98 0 187 37 27 9 25 1.86
130257--130305 13 3.4 15 72 18 50 0 24 6 69 1.11
130246--130306 28 2.2 28 86 11 83 0 26 4 68 1.09
134254--134351 32 3.1 32 98 0 187 25 9 27 37 1.86
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
142486--142544 28 2.1 29 87 3 84 57 8 5 28 1.50
150463--150508 9 5.1 9 78 0 56 34 28 4 32 1.77
150432--150521 18 5.2 18 92 4 132 35 24 7 32 1.84
152871--152960 21 4.1 22 75 8 76 54 10 23 12 1.67
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Tables: 1
The End!