NC_056885.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_056885.1 Chaenomeles speciosa chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 160040
Tables: 1
This is table 1 of 1 ( 93 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1--50 20 2.9 16 76 21 55 30 6 0 64 1.18
11--56 20 2.3 20 96 0 83 32 4 0 63 1.14
19--78 20 3.1 20 85 4 70 43 1 0 55 1.10
5095--5145 21 2.5 20 93 6 84 60 3 1 33 1.26
6488--6523 18 2.0 18 94 0 63 16 19 0 63 1.30
6863--6902 20 2.0 20 100 0 80 70 5 5 20 1.26
7133--7164 15 2.1 15 94 0 55 31 0 6 62 1.20
7154--7179 12 2.2 12 100 0 52 42 0 15 42 1.47
8718--8748 15 2.1 15 93 0 53 51 9 12 25 1.70
10323--10395 23 3.1 23 78 7 74 60 2 2 34 1.25
10331--10419 25 3.6 24 79 11 99 64 2 1 32 1.13
10354--10417 23 2.6 26 87 9 82 64 3 0 32 1.10
10331--10409 23 3.4 23 89 5 106 64 2 1 31 1.15
10425--10459 17 2.1 17 100 0 70 42 11 5 40 1.65
10529--10560 16 2.0 16 93 0 55 46 6 0 46 1.27
10668--10723 19 2.8 21 84 13 82 51 0 3 44 1.18
13727--13766 11 3.9 11 81 18 59 17 0 5 77 0.94
13720--13771 19 2.7 20 90 6 88 21 0 3 75 0.97
13852--13885 17 2.0 17 100 0 68 41 11 17 29 1.85
28365--28391 13 2.1 13 100 0 54 40 0 22 37 1.54
33605--33647 14 3.1 14 100 0 86 20 30 6 41 1.79
33839--33867 14 2.1 14 100 0 58 51 0 0 48 1.00
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
33818--33867 10 5.0 10 88 9 66 50 2 0 48 1.12
34301--34325 13 1.9 13 100 0 50 76 0 0 24 0.80
34301--34333 17 1.9 17 93 0 57 72 0 0 27 0.85
34321--34370 18 2.8 18 87 6 66 52 2 0 46 1.12
34918--34953 16 2.3 16 95 4 65 50 5 0 44 1.25
35013--35052 17 2.4 17 95 0 71 72 0 15 12 1.12
35051--35087 18 2.1 18 100 0 74 62 0 16 21 1.33
39100--39131 9 3.8 9 84 16 50 62 6 0 31 1.20
39099--39131 16 2.1 16 100 0 66 63 6 0 30 1.18
49478--49512 18 2.0 18 88 5 54 40 8 11 40 1.72
49611--49673 17 3.6 18 81 10 76 33 4 0 61 1.17
49847--49912 23 2.9 23 95 4 116 45 4 1 48 1.32
52864--52895 16 2.0 16 100 0 64 18 12 12 56 1.67
54362--54393 15 2.1 15 100 0 64 62 6 6 25 1.42
54363--54416 19 3.1 19 87 10 71 57 3 5 33 1.40
54430--54464 18 1.9 18 88 0 52 48 0 11 40 1.39
54453--54508 12 4.5 13 80 14 57 46 1 10 41 1.49
54536--54598 2 30.0 2 78 9 63 52 6 0 41 1.27
54542--54600 20 3.0 20 92 5 93 54 6 0 38 1.27
54536--54612 14 5.3 14 75 18 52 53 6 1 38 1.35
54543--54612 20 3.5 20 88 7 92 54 5 1 38 1.33
54609--54643 17 2.1 17 100 0 70 28 11 5 54 1.59
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
55419--55453 17 2.1 17 100 0 70 17 5 22 54 1.64
58099--58128 14 2.1 14 93 0 51 20 13 10 56 1.65
59941--59965 12 2.1 12 100 0 50 60 0 8 32 1.26
60183--60230 24 2.0 24 100 0 96 20 12 0 66 1.24
62036--62103 24 2.8 24 90 0 100 51 1 8 38 1.42
62448--62483 18 2.0 18 100 0 72 38 5 11 44 1.63
62448--62480 10 3.5 10 84 16 52 42 6 12 39 1.67
62570--62612 10 4.0 10 77 16 50 51 6 20 20 1.71
62574--62619 23 2.0 23 100 0 92 52 4 21 21 1.64
62669--62716 23 2.1 23 100 0 96 41 18 4 35 1.70
66835--66881 24 1.9 25 95 4 87 29 12 10 46 1.76
66961--67009 21 2.3 21 89 6 73 38 4 4 53 1.39
66992--67022 16 1.9 16 100 0 62 41 0 6 51 1.27
66970--67013 21 2.1 21 100 0 88 36 0 4 59 1.18
66974--67019 21 2.2 21 92 0 74 41 0 6 52 1.27
69095--69130 18 2.1 17 94 5 63 41 5 5 47 1.50
71512--71542 14 2.2 14 94 0 53 74 6 3 16 1.16
71631--71669 21 1.9 21 89 5 62 33 20 10 35 1.86
78126--78161 18 2.0 18 94 0 63 41 5 11 41 1.64
83199--83229 14 2.2 14 100 0 62 12 6 0 80 0.89
83195--83233 18 2.2 18 85 0 51 12 5 0 82 0.83
88672--88711 20 2.0 20 95 0 71 37 10 2 50 1.50
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
92884--92951 21 3.2 21 82 0 82 11 22 7 58 1.57
95306--95357 18 2.9 18 94 0 95 32 7 28 30 1.85
98310--98371 21 3.0 21 97 2 117 53 4 0 41 1.22
102813--102851 15 2.9 14 88 11 55 17 10 0 71 1.12
102855--102880 12 2.2 12 100 0 52 7 7 0 84 0.77
111579--111642 31 2.1 31 93 0 110 37 26 9 26 1.87
112356--112393 18 2.1 18 100 0 76 28 5 5 60 1.40
117242--117300 5 11.2 5 73 22 50 52 5 1 40 1.33
117243--117297 11 5.0 11 75 20 53 50 5 1 41 1.36
117235--117300 33 2.0 33 100 0 132 48 9 3 39 1.50
117967--118095 26 5.0 26 95 4 228 63 10 0 25 1.27
117960--118072 16 8.2 16 68 31 100 62 11 0 25 1.28
117983--118055 10 8.1 10 71 22 72 61 10 0 27 1.29
118624--118666 2 24.0 2 78 21 51 51 0 0 48 1.00
118627--118666 14 2.9 14 100 0 80 50 0 0 50 1.00
118631--118670 12 3.2 12 92 7 62 50 0 0 50 1.00
118666--118711 23 2.0 23 91 4 76 54 0 0 45 0.99
118675--118721 23 2.0 23 84 8 60 55 0 2 42 1.12
132317--132350 15 2.3 15 89 0 50 0 23 5 70 1.09
135585--135622 18 2.1 18 100 0 76 60 5 5 28 1.40
136336--136399 31 2.1 31 93 0 110 26 9 26 37 1.87
145098--145123 12 2.2 12 100 0 52 84 0 7 7 0.77
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
145127--145165 15 2.9 14 88 11 55 71 0 10 17 1.12
149607--149668 21 3.0 21 97 2 117 41 0 4 53 1.22
152621--152672 18 2.9 18 94 0 95 30 28 7 32 1.85
155028--155116 21 4.1 21 81 5 81 56 7 23 12 1.62
159267--159306 20 2.0 20 95 0 71 50 2 10 37 1.50
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Tables: 1
The End!