NC_056927.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_056927.1 Eleusine coracana voucher SSD68 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 135144
Tables: 1
This is table 1 of 1 ( 28 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
5682--5719 19 2.0 19 100 0 76 57 0 26 15 1.38
6592--6617 13 2.0 13 100 0 52 53 23 0 23 1.46
12443--12481 19 2.1 19 95 0 69 28 15 30 25 1.96
12835--12886 18 2.9 18 94 0 86 42 23 0 34 1.54
14694--14743 25 2.0 25 96 0 91 42 8 4 46 1.52
14807--14936 67 1.9 67 85 0 179 29 18 26 26 1.98
25403--25442 21 1.9 21 100 0 80 27 27 15 30 1.96
26296--26325 15 2.0 15 93 0 51 30 33 16 20 1.94
27372--27453 21 3.9 21 90 0 128 40 14 30 14 1.86
27455--27597 42 3.4 42 85 8 170 43 16 23 16 1.88
27485--27608 21 5.9 21 74 13 121 43 16 21 18 1.88
27644--27686 21 2.0 21 86 0 59 44 13 25 16 1.85
30115--30184 32 2.2 33 97 2 133 42 5 8 42 1.59
33899--33938 19 2.1 19 90 0 62 32 10 12 45 1.75
42513--42544 16 2.0 16 100 0 64 56 6 12 25 1.59
46966--47002 18 2.1 18 100 0 74 5 0 10 83 0.79
48507--48545 19 2.1 19 95 0 69 48 10 10 30 1.70
51193--51228 17 2.1 17 89 0 54 33 5 5 55 1.46
54868--54922 27 2.0 27 100 0 110 36 3 14 45 1.63
61088--61127 20 2.0 20 100 0 80 5 15 15 65 1.44
65855--65975 21 5.8 21 86 0 170 39 25 4 29 1.77
65855--65975 42 2.9 42 89 0 188 39 25 4 29 1.77
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
76379--76421 18 2.4 18 88 0 59 23 25 6 44 1.78
76655--76694 18 2.2 18 86 0 53 2 20 7 70 1.24
76665--76707 18 2.4 18 92 0 68 6 13 2 76 1.08
104005--104044 21 1.9 21 89 0 62 62 0 7 30 1.23
104129--104166 17 2.3 17 86 4 51 34 15 0 50 1.45
104140--104173 17 2.0 17 94 0 59 32 14 0 52 1.42
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Tables: 1
The End!