NC_056970.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_056970.1 Polygala sibirica chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 165397
Tables: 1
This is table 1 of 1 ( 91 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6--36 16 2.0 15 93 6 53 58 12 6 22 1.58
3704--3745 22 1.9 22 90 0 66 45 16 14 23 1.84
4621--4665 22 2.0 22 91 0 72 24 22 6 46 1.75
5217--5254 20 1.9 20 100 0 76 47 10 0 42 1.38
9809--9833 12 2.1 12 100 0 50 44 8 0 48 1.32
13285--13318 14 2.5 14 85 4 52 35 20 2 41 1.68
15441--15479 19 2.1 19 95 0 69 28 17 7 46 1.76
15656--15726 24 3.0 24 82 12 76 26 4 2 66 1.24
15622--15704 4 21.2 4 72 16 50 26 2 3 67 1.19
17273--17360 27 3.3 27 69 20 85 51 1 3 44 1.25
17255--17362 53 2.0 53 100 0 216 49 1 3 45 1.30
17256--17338 26 3.2 26 68 21 82 48 2 3 45 1.33
17273--17385 53 2.1 52 84 9 140 50 0 5 43 1.31
17418--17462 15 2.8 16 90 6 65 53 4 2 40 1.33
22678--22705 14 2.0 14 100 0 56 42 14 7 35 1.73
24091--24147 2 30.5 2 81 13 68 47 0 0 52 1.00
24092--24147 17 3.5 17 80 9 73 48 0 0 51 1.00
24093--24175 25 3.6 24 78 12 86 43 0 0 56 0.99
24104--24186 29 2.9 29 80 7 89 44 0 0 55 0.99
24096--24189 17 4.9 20 69 21 60 44 0 0 55 0.99
37449--37473 13 1.9 13 100 0 50 56 0 28 16 1.41
42433--42458 13 2.0 13 100 0 52 30 0 7 61 1.24
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
46391--46437 23 2.0 23 100 0 94 29 12 8 48 1.71
59187--59217 16 2.0 16 93 6 55 48 12 0 38 1.42
63248--63288 21 2.0 21 95 0 73 17 7 4 70 1.28
65363--65406 22 2.0 22 95 0 79 56 2 4 36 1.32
68418--68466 22 2.3 21 83 10 64 40 12 6 40 1.67
68459--68492 16 2.1 17 94 5 61 41 11 0 47 1.40
68575--68650 18 4.1 18 83 13 91 35 15 10 38 1.82
71271--71314 6 7.3 6 78 0 52 18 22 0 59 1.38
71271--71316 18 2.6 18 86 6 58 19 23 0 56 1.42
71288--71335 18 2.6 19 87 6 64 22 25 2 50 1.60
71319--71395 30 2.6 30 85 0 109 28 25 3 41 1.73
71381--71420 18 2.2 18 90 0 62 20 22 2 55 1.56
79029--79067 15 2.6 15 88 8 53 38 5 2 53 1.37
85704--85756 27 2.0 27 85 14 74 64 0 15 20 1.29
85704--85755 12 4.0 13 73 26 56 63 0 15 21 1.31
86646--86693 24 2.0 24 95 0 87 18 8 31 41 1.80
88392--88448 21 2.7 21 91 0 87 21 28 19 31 1.97
88523--88568 21 2.1 22 88 11 69 10 23 8 56 1.61
90205--90277 30 2.4 30 93 0 119 35 31 4 28 1.76
90510--90545 18 2.0 18 100 0 72 27 16 11 44 1.82
90931--91037 9 12.2 9 84 5 139 31 9 32 26 1.88
90935--91044 27 4.2 27 87 4 163 30 11 32 25 1.92
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
92382--92454 9 8.1 9 73 0 56 28 23 21 26 1.99
92415--92467 18 2.9 18 75 5 54 28 16 24 30 1.97
92514--92562 9 5.4 9 87 0 71 28 22 28 20 1.98
98864--98902 14 2.8 14 88 7 53 17 7 0 74 1.05
100470--100509 20 2.0 20 100 0 80 45 15 25 15 1.84
102147--102241 32 3.0 32 95 0 172 34 12 21 31 1.91
102256--102297 22 1.9 22 100 0 84 42 11 23 21 1.86
102258--102305 22 2.2 22 88 3 71 43 10 18 27 1.82
111468--111565 18 5.1 18 84 13 133 28 39 9 22 1.85
111469--111517 24 2.0 24 96 0 89 28 44 6 20 1.75
111973--112065 18 5.2 18 85 0 87 52 16 16 15 1.75
113269--113313 22 2.0 23 87 12 67 80 2 11 6 0.99
113274--113313 12 3.5 12 80 19 50 82 0 12 5 0.82
113938--114027 30 3.0 30 93 0 153 54 16 16 12 1.71
120323--120356 16 2.1 16 89 10 52 44 8 11 35 1.72
122124--122162 20 2.0 20 85 10 53 56 23 0 20 1.42
122901--122941 19 2.2 19 100 0 82 29 9 9 51 1.67
123093--123131 19 2.1 19 100 0 78 41 0 0 58 0.98
123470--123502 2 17.0 2 87 6 50 45 0 3 51 1.16
123475--123505 11 2.9 11 95 4 55 45 0 0 54 0.99
123686--123716 15 2.1 15 94 5 55 83 3 0 12 0.75
128731--128764 15 2.1 16 89 10 52 35 11 8 44 1.72
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
135060--135149 30 3.0 30 93 0 153 12 16 16 54 1.71
135774--135813 12 3.5 12 80 19 50 5 12 0 82 0.82
135774--135818 22 2.0 23 87 12 67 6 11 2 80 0.99
137054--137114 18 3.4 18 90 0 86 18 18 16 47 1.83
137522--137594 18 4.1 18 100 0 146 21 10 38 28 1.88
137570--137618 24 2.0 24 96 0 89 20 6 44 28 1.75
146651--146706 29 2.1 25 84 15 69 19 23 10 46 1.81
146790--146831 22 1.9 22 100 0 84 21 23 11 42 1.86
146846--146940 32 3.0 32 95 0 172 31 21 12 34 1.91
148578--148617 20 2.0 20 100 0 80 15 25 15 45 1.84
150185--150223 14 2.8 14 88 7 53 74 0 7 17 1.05
156525--156573 9 5.4 9 87 0 71 20 28 22 28 1.98
156633--156705 9 8.1 9 73 0 56 26 21 23 28 1.99
156620--156672 18 2.9 18 75 5 54 30 24 16 28 1.97
156647--156733 45 1.9 45 83 0 111 24 22 22 29 1.99
156901--156968 33 2.1 33 85 0 91 7 42 16 33 1.76
158050--158156 9 12.2 9 84 5 139 26 32 9 31 1.88
158043--158152 27 4.2 27 87 4 163 25 32 11 30 1.92
158542--158577 18 2.0 18 100 0 72 44 11 16 27 1.82
158810--158882 30 2.4 30 93 0 119 28 4 31 35 1.76
160519--160564 21 2.1 21 88 11 67 56 8 23 10 1.61
160639--160695 21 2.7 21 91 0 87 31 19 28 21 1.97
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
162394--162441 24 2.0 24 95 0 87 41 31 8 18 1.80
163332--163383 12 4.0 13 73 26 56 21 15 0 63 1.31
163331--163383 27 2.0 27 85 14 74 20 15 0 64 1.29
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Tables: 1
The End!