NC_057065.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_057065.1 Dioscorea nipponica chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 153255
Tables: 1
This is table 1 of 1 ( 23 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
7821--7897 36 2.1 35 85 11 100 37 3 1 57 1.26
8779--8803 13 1.9 13 100 0 50 40 0 24 36 1.55
11958--11989 16 2.0 16 93 0 55 15 12 3 68 1.32
12080--12135 9 6.3 9 76 12 53 30 1 0 67 1.01
12090--12134 7 6.9 7 78 14 51 31 0 0 68 0.89
12089--12132 16 2.7 17 82 10 65 31 0 0 68 0.90
12086--12148 22 2.9 22 72 20 60 33 0 0 66 0.92
27603--27632 13 2.4 13 94 5 53 56 0 10 33 1.32
28290--28339 21 2.4 21 93 3 84 24 12 0 64 1.27
30780--30819 20 2.0 20 100 0 80 35 15 20 30 1.93
45809--45843 17 2.1 17 100 0 70 48 17 11 22 1.79
50428--50458 12 2.5 13 94 5 55 70 6 0 22 1.09
58617--58652 18 2.0 18 88 0 54 33 13 13 38 1.85
60347--60393 23 2.0 23 100 0 94 23 12 12 51 1.74
67398--67441 21 2.1 21 91 0 70 31 25 11 31 1.91
80360--80389 15 2.0 15 93 0 51 43 13 23 20 1.86
88355--88423 21 3.3 21 97 0 129 13 30 8 47 1.72
99621--99661 3 13.7 3 89 0 64 60 0 4 34 1.18
125008--125050 16 2.8 15 82 13 52 51 9 0 39 1.34
127733--127764 11 3.1 11 82 17 50 31 9 0 59 1.29
137051--137091 3 13.7 3 89 0 64 34 4 0 60 1.18
148289--148357 21 3.3 21 97 0 129 47 8 30 13 1.72
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
148289--148378 21 4.1 21 92 4 126 48 10 27 13 1.74
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Tables: 1
The End!