NC_057066.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_057066.1 Dioscorea japonica chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 153293
Tables: 1
This is table 1 of 1 ( 25 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
7831--7907 36 2.1 35 85 11 100 37 3 1 57 1.26
8789--8813 13 1.9 13 100 0 50 40 0 24 36 1.55
11967--11998 16 2.0 16 93 0 55 15 12 3 68 1.32
12099--12143 7 6.9 7 78 14 51 31 0 0 68 0.89
12098--12151 19 3.2 16 78 19 56 31 0 0 68 0.90
12111--12147 19 1.9 19 100 0 74 32 0 0 67 0.91
27620--27649 13 2.4 13 94 5 53 56 0 10 33 1.32
28307--28356 21 2.4 21 93 3 84 24 12 0 64 1.27
30801--30840 20 2.0 20 100 0 80 35 15 20 30 1.93
45829--45863 17 2.1 17 100 0 70 48 17 11 22 1.79
50449--50479 12 2.5 13 94 5 55 70 6 0 22 1.09
58638--58673 18 2.0 18 88 0 54 33 13 13 38 1.85
60368--60414 23 2.0 23 100 0 94 23 12 12 51 1.74
67419--67462 21 2.1 21 91 0 70 31 25 11 31 1.91
70628--70660 9 3.8 9 92 8 59 66 9 0 24 1.20
70628--70660 17 1.9 17 100 0 66 66 9 0 24 1.20
70631--70669 17 2.3 17 86 8 53 71 7 2 17 1.21
80389--80418 15 2.0 15 93 0 51 43 13 23 20 1.86
88386--88454 21 3.3 21 97 0 129 13 30 8 47 1.72
99652--99695 3 14.7 3 90 0 70 61 0 4 34 1.16
125043--125085 16 2.8 15 82 13 52 51 9 0 39 1.34
127768--127799 11 3.1 11 82 17 50 31 9 0 59 1.29
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
137086--137129 3 14.7 3 90 0 70 34 4 0 61 1.16
148327--148395 21 3.3 21 97 0 129 47 8 30 13 1.72
148327--148416 21 4.1 21 92 4 126 48 10 27 13 1.74
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Tables: 1
The End!