NC_057086.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_057086.1 Crataegus pinnatifida chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 159898
Tables: 1
This is table 1 of 1 ( 77 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1601--1633 16 2.1 16 100 0 66 33 6 6 54 1.50
6263--6291 14 2.1 14 100 0 58 72 0 0 27 0.85
7073--7122 15 3.4 15 77 2 57 32 0 8 60 1.26
7129--7161 16 2.1 16 94 0 57 51 3 6 39 1.42
7311--7354 22 2.0 22 100 0 88 45 13 0 40 1.44
8685--8715 15 2.1 15 93 0 53 51 9 12 25 1.70
9886--9912 11 2.5 11 100 0 54 81 0 7 11 0.87
10309--10377 24 2.6 25 77 15 68 43 1 8 46 1.43
10531--10569 19 2.1 19 95 0 69 51 2 5 41 1.38
13561--13595 17 2.1 17 100 0 70 40 5 11 42 1.65
13708--13741 17 2.0 17 100 0 68 41 11 17 29 1.85
21678--21707 15 2.0 15 93 0 51 36 13 16 33 1.88
21683--21712 15 2.0 15 93 0 51 33 13 23 30 1.93
28227--28253 13 2.1 13 100 0 54 40 0 22 37 1.54
30877--30916 20 2.0 20 95 0 71 45 7 0 47 1.31
30921--30949 14 2.1 14 100 0 58 44 13 13 27 1.82
32624--32671 23 2.1 23 100 0 96 54 20 4 20 1.61
33473--33501 14 2.1 14 100 0 58 20 31 6 41 1.79
33617--33665 24 2.0 24 100 0 98 51 16 0 32 1.45
33695--33730 9 3.8 10 92 7 58 50 0 0 50 1.00
33695--33732 19 2.1 18 90 5 58 47 0 0 52 1.00
34140--34195 17 3.1 18 85 12 62 57 0 0 42 0.99
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
38781--38807 12 2.2 12 100 0 54 62 7 0 29 1.22
38898--38937 15 2.7 15 96 0 71 60 5 0 35 1.19
38892--38919 12 2.3 12 100 0 56 60 7 0 32 1.24
38891--38934 12 3.4 12 77 17 52 56 6 0 36 1.26
48822--48875 20 2.8 20 91 8 87 44 0 7 48 1.31
49243--49311 34 2.0 34 100 0 138 57 2 11 27 1.48
49251--49306 17 3.3 17 72 18 62 60 1 10 26 1.40
49260--49319 16 3.6 17 71 20 56 63 3 10 23 1.40
49391--49425 18 2.0 18 88 5 54 40 8 11 40 1.72
51684--51730 22 2.1 22 100 0 94 53 0 21 25 1.46
52723--52754 16 2.0 16 100 0 64 18 12 12 56 1.67
54227--54291 26 2.7 23 77 13 69 43 4 4 47 1.44
54229--54285 26 2.2 25 87 3 78 43 3 3 49 1.36
54279--54316 18 2.1 18 90 0 58 50 0 10 39 1.37
54349--54418 2 35.0 2 77 11 72 51 5 0 42 1.25
54348--54417 34 2.0 34 97 2 131 50 5 0 44 1.26
57740--57790 26 2.0 26 100 0 102 35 5 7 50 1.55
57915--57944 14 2.1 14 93 0 51 20 13 10 56 1.65
59757--59781 12 2.1 12 100 0 50 60 0 8 32 1.26
62321--62386 10 6.0 10 74 19 60 51 6 21 21 1.69
62335--62393 10 5.0 13 69 23 58 52 3 22 22 1.61
62325--62393 23 3.0 23 100 0 138 52 4 21 21 1.64
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
62425--62491 20 3.3 19 76 17 71 38 1 0 59 1.06
62401--62472 24 3.1 24 88 4 103 33 0 1 65 1.02
62458--62497 19 2.1 19 100 0 80 45 5 0 50 1.23
62568--62598 15 2.1 15 100 0 62 54 6 6 32 1.51
66768--66798 16 1.9 16 100 0 62 41 0 6 51 1.27
66797--66851 25 2.2 25 96 3 101 25 7 25 41 1.81
68890--68925 18 2.1 17 94 5 63 38 5 8 47 1.57
70611--70647 19 2.0 18 94 5 65 0 10 2 86 0.67
71432--71470 21 1.9 21 89 5 62 33 20 10 35 1.86
77921--77956 18 2.0 18 94 0 63 41 5 11 41 1.64
84136--84182 24 2.0 24 95 0 85 27 0 4 68 1.08
85952--85996 22 2.0 22 91 0 72 37 20 6 35 1.79
88491--88530 20 2.0 20 95 0 71 37 10 2 50 1.50
92695--92762 21 3.2 21 82 0 82 11 22 7 58 1.57
95117--95168 18 2.9 18 94 0 95 32 7 28 30 1.85
98121--98182 21 3.0 21 97 2 117 53 4 0 41 1.22
102629--102667 15 2.9 14 88 11 55 17 10 0 71 1.12
102671--102696 12 2.2 12 100 0 52 7 7 0 84 0.77
111409--111472 31 2.1 31 93 0 110 37 26 9 26 1.87
114817--114847 12 2.7 12 95 5 55 25 16 0 58 1.38
117660--117700 20 2.0 20 100 0 82 56 0 14 29 1.39
117738--117779 19 2.2 19 95 0 75 61 0 11 26 1.30
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
118269--118318 25 2.0 25 100 0 100 24 4 20 52 1.63
120355--120388 17 2.0 17 100 0 68 64 0 11 23 1.26
125425--125449 12 2.1 12 100 0 50 48 8 0 44 1.32
132014--132047 15 2.3 15 89 0 50 0 23 5 70 1.09
136026--136089 31 2.1 31 93 0 110 26 9 26 37 1.87
144802--144827 12 2.2 12 100 0 52 84 0 7 7 0.77
144831--144869 15 2.9 14 88 11 55 71 0 10 17 1.12
149316--149377 21 3.0 21 97 2 117 41 0 4 53 1.22
152330--152381 18 2.9 18 94 0 95 30 28 7 32 1.85
154737--154825 21 4.1 21 81 5 81 56 7 23 12 1.62
158968--159007 20 2.0 20 95 0 71 50 2 10 37 1.50
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Tables: 1
The End!